Browse Element(s) Details


OsAffx.28973.1.S1_at

Description tigr:9636.m00028
TID=OsAffx.28973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0128011/11ACT domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28973.1.S1_at--622--5051Chr08:178850..178874 (25 bp)
GCAGCAGCATGATCATCAGCTCCAA
LOC_Os08g01280
OsAffx.28973.1.S1_at--919--1551Chr08:178821..178845 (25 bp)
AGCTCCGTCTCCACTTTAGGCGGAT
LOC_Os08g01280
OsAffx.28973.1.S1_at--627--511Chr08:177541..177923 (25 bp)
ATCGTCAGGGTTCGTGTCCATGAGA
LOC_Os08g01280
OsAffx.28973.1.S1_at--337--6791Chr08:177514..177538 (25 bp)
GTTTTCGTATGCCTTGACAAACCCA
LOC_Os08g01280
OsAffx.28973.1.S1_at--931--2371Chr08:177500..177520 (21 bp)
AAACCCAAGCTCCTTAGTCAGCTAT
LOC_Os08g01280
OsAffx.28973.1.S1_at--818--10051Chr08:177302..177322 (21 bp)
TAGTCAGCTATCTGCGTTGGTGTCT
LOC_Os08g01280
OsAffx.28973.1.S1_at--154--791Chr08:177249..177273 (25 bp)
ATGTGTACTCCACACTCGATGCCTT
LOC_Os08g01280
OsAffx.28973.1.S1_at--806--10571Chr08:177224..177248 (25 bp)
TTCTCTCAGCGTATTTCTCGTTGAT
LOC_Os08g01280
OsAffx.28973.1.S1_at--68--1451Chr08:176678..176699 (22 bp)
AGAAGGTTGGTCGAGCTGCACATTG
LOC_Os08g01280
OsAffx.28973.1.S1_at--894--5891Chr08:176666..176690 (25 bp)
GAGCTGCACATTGTATCATCTTCGT
LOC_Os08g01280
OsAffx.28973.1.S1_at--964--10151Chr08:176653..176677 (25 bp)
TATCATCTTCGTGGAGCTAGGGCTC
LOC_Os08g01280
Target Sequence 
GCAGCAGCATGATCATCAGCTCCAACGCCAGCTCCGTCTCCACTTTAGGCGGATGCCGGCGAGGTATTTGGTGGACATGT
GCGGCGGCAAGGCGGAGGAGGTGCTGATCCACCTCCAGCTCCTCGCCGACTGCGCCGACCCCGCCAATCGCCCCGTCGTC
CATGCCCGCTTTCTCCTCACTATCCCTTCTTCTTCCTCCTCCTCCATCGTCAGGGTTCGTGTCCATGAGATTGTTTTCGT
ATGCCTTGACAAACCCAAGCTCCTTAGTCAGCTATCTGCGTTGGTGTCTGAGGTTGGACTGAATATCCGTGAAGCCCATG
TGTACTCCACACTCGATGCCTTTTCTCTCAGCGTATTTCTCGTTGATGGTTGGAACAAAGAGGAAGCGGGTGGATTGCTT
AAGGCAATCAAGGAGAAGGTTGGTCGAGCTGCACATTGTATCATCTTCGTGGAGCTAGGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis