Browse Element(s) Details


Os.247.1.S1_at

Description gb:AK105320.1
DB_XREF= gi:32990529
TID=Os.247.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G01, full insert sequence.
FL= gb:AK105320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1665011/11Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os08g012401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed
LOC_Os01g16680Os.47508.1.A1_s_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680OsAffx.2475.1.S1_x_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680Os.11892.1.S1_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0008283biological_processcell proliferation
GO:0009650biological_processUV protection
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.247.1.S1_at--114--2511Chr01:9442766..9442790 (25 bp)
AACATCTTCAGCTGGGTGGGCACCA
LOC_Os01g16650
Os.247.1.S1_at--191--4072Chr08:152958..153159 (25 bp)
CGACGGCGTACGAGGGCACCTCCTA
LOC_Os08g01240
Os.247.1.S1_at--714--9851Chr01:9442865..9442889 (25 bp)
TACAAGCCGCCCAAGGTGAGGTTCG
LOC_Os01g16650
Os.247.1.S1_at--67--5651Chr01:9442940..9442964 (25 bp)
GACATCCTCCAGGACAAGTGGTCCT
LOC_Os01g16650
Os.247.1.S1_at--764--4511Chr01:9443054..9443078 (25 bp)
GCCCTCTGGCCTAACCAGGACGAGT
LOC_Os01g16650
Os.247.1.S1_at--190--8611Chr01:9443088..9443112 (25 bp)
TGGTCGAGAAGCTCTACAAGCCCAC
LOC_Os01g16650
Os.247.1.S1_at--706--3231Chr01:9443104..9443128 (25 bp)
CAAGCCCACCGCGTAGAAGTTGGTG
LOC_Os01g16650
Os.247.1.S1_at--745--3931Chr01:9443140..9443164 (25 bp)
CGGCGATCTGATCTGGCCTTCTCAC
LOC_Os01g16650
Os.247.1.S1_at--292--4451Chr01:9443155..9443179 (25 bp)
GCCTTCTCACCTTGAATCGATGATG
LOC_Os01g16650
Os.247.1.S1_at--386--6271Chr01:9443268..9443292 (25 bp)
GATGTAAGAGTGCTTGCCGTCGACA
LOC_Os01g16650
Os.247.1.S1_at--1061--4491Chr01:9443283..9443307 (25 bp)
GCCGTCGACAAGATGTGGTCATACT
LOC_Os01g16650
Target Sequence 
AACATCTTCAGCTGGGTGGGCACCATCGCCGGGTCCGCCGCGACGGCGTACGAGGGCACCTCCTACCGCCTCTCCCTCGC
CTTCCCCGGCGAGTACCCGTACAAGCCGCCCAAGGTGAGGTTCGAAACCCCCTGCTTCCACCCAAACGTGGACGCCCACG
GCAACATCTGCCTCGACATCCTCCAGGACAAGTGGTCCTCCGCCTACGACGTCCGCACCATCCTCCTCTCCATCCAGAGC
CTCCTCGGCGAGCCCAACAACGACTCCCCCCTCAACACCCAGGCCGCCGCCCTCTGGCCTAACCAGGACGAGTTCAGGAA
GATGGTCGAGAAGCTCTACAAGCCCACCGCGTAGAAGTTGGTGGCGCCTTCGCCCGGCGATCTGATCTGGCCTTCTCACC
TTGAATCGATGATGATTCGAATGCGATTGTNGTGCGAGTCGGATTGGAACTNTTCGATCTGTAATTTTTTTTTNTNNNGG
TTGTTTGAATGATTCATTTGTTTCGATGTAAGAGTGCTTGCCGTCGACAAGATGTGGTCATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis