Browse Element(s) Details


Os.22454.1.S1_at

Description gb:NM_188074.1
DB_XREF= gi:34903231
TID=Os.22454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1664011/11DSS1/SEM1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22454.1.S1_at--1097--3451Chr01:9440549..9440573 (25 bp)
CAGGTTGCGTTCGTGGCCGAGACCT
LOC_Os01g16640
Os.22454.1.S1_at--1155--8391Chr01:9440535..9440559 (25 bp)
GGCCGAGACCTTCGGTTTGGGCGAG
LOC_Os01g16640
Os.22454.1.S1_at--770--5991Chr01:9440531..9440555 (25 bp)
GAGACCTTCGGTTTGGGCGAGTTGG
LOC_Os01g16640
Os.22454.1.S1_at--488--10031Chr01:9440523..9440544 (22 bp)
TTTGGGCGAGTTGGTTTGGTTGAAT
LOC_Os01g16640
Os.22454.1.S1_at--998--691Chr01:9438692..9438716 (25 bp)
ATGAGGCCATCCAGCAATGGGAGGA
LOC_Os01g16640
Os.22454.1.S1_at--118--8831Chr01:9438667..9438691 (25 bp)
TGATTGGGATGATGACGACGTCAAT
LOC_Os01g16640
Os.22454.1.S1_at--129--3011Chr01:9438645..9438669 (25 bp)
AATGACGACTTCTCGCTTCAGCTGA
LOC_Os01g16640
Os.22454.1.S1_at--366--691Chr01:9438644..9438668 (25 bp)
ATGACGACTTCTCGCTTCAGCTGAG
LOC_Os01g16640
Os.22454.1.S1_at--991--1851Chr01:9438641..9438665 (25 bp)
ACGACTTCTCGCTTCAGCTGAGGAA
LOC_Os01g16640
Os.22454.1.S1_at--254--5691Chr01:9438639..9438663 (25 bp)
GACTTCTCGCTTCAGCTGAGGAAGG
LOC_Os01g16640
Os.22454.1.S1_at--1039--3631Chr01:9438637..9438661 (25 bp)
CTTCTCGCTTCAGCTGAGGAAGGAG
LOC_Os01g16640
Target Sequence 
CAGGTTGCGTTCGTGGCCGAGACCTTCGGTTTGGGCGAGTTGGTTTGGTTGAATGGGATGACAAGGAGGATGGTGATGAG
GCCATCCAGCAATGGGAGGATGATTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis