Browse Element(s) Details


OsAffx.23277.2.S1_at

Description tigr:9629.m01656
TID=OsAffx.23277.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1662011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23277.2.S1_at--568--4311Chr01:9428948..9428972 (25 bp)
CCTTCTCTACCACTGTGGGTACTAT
LOC_Os01g16620
OsAffx.23277.2.S1_at--772--1711Chr01:9428940..9428964 (25 bp)
ACCACTGTGGGTACTATGAAGACTG
LOC_Os01g16620
OsAffx.23277.2.S1_at--655--7491Chr01:9428934..9428958 (25 bp)
GTGGGTACTATGAAGACTGCCTGCA
LOC_Os01g16620
OsAffx.23277.2.S1_at--1129--7831Chr01:9428931..9428955 (25 bp)
GGTACTATGAAGACTGCCTGCAATA
LOC_Os01g16620
OsAffx.23277.2.S1_at--261--5371Chr01:9428923..9428947 (25 bp)
GAAGACTGCCTGCAATACTTGGCAT
LOC_Os01g16620
OsAffx.23277.2.S1_at--130--5731Chr01:9428920..9428944 (25 bp)
GACTGCCTGCAATACTTGGCATCAT
LOC_Os01g16620
OsAffx.23277.2.S1_at--56--4471Chr01:9428916..9428940 (25 bp)
GCCTGCAATACTTGGCATCATACCA
LOC_Os01g16620
OsAffx.23277.2.S1_at--653--3611Chr01:9428906..9428930 (25 bp)
CTTGGCATCATACCAAACCGCAGTG
LOC_Os01g16620
OsAffx.23277.2.S1_at--604--4971Chr01:9428905..9428926 (22 bp)
GCATCATACCAAACCGCAGTGGCTG
LOC_Os01g16620
OsAffx.23277.2.S1_at--353--311Chr01:9428807..9428921 (25 bp)
ATACCAAACCGCAGTGGCTGGGCAG
LOC_Os01g16620
OsAffx.23277.2.S1_at--936--4371Chr01:9428804..9428918 (25 bp)
CCAAACCGCAGTGGCTGGGCAGCAT
LOC_Os01g16620
Target Sequence 
CCTTCTCTACCACTGTGGGTACTATGAAGACTGCCTGCAATACTTGGCATCATACCAAACCGCAGTGGCTGGGCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23277.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis