Browse Element(s) Details


OsAffx.9990.1.S1_at

Description tigr:9629.m01655
TID=OsAffx.9990.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plastocyanin-like domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1661011/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9990.1.S1_at--1028--2471Chr01:9427273..9427297 (25 bp)
AACACCAGCTACACCTGGTGGGCGA
LOC_Os01g16610
OsAffx.9990.1.S1_at--10--1731Chr01:9427270..9427294 (25 bp)
ACCAGCTACACCTGGTGGGCGATGA
LOC_Os01g16610
OsAffx.9990.1.S1_at--93--4851Chr01:9427266..9427290 (25 bp)
GCTACACCTGGTGGGCGATGAACAA
LOC_Os01g16610
OsAffx.9990.1.S1_at--1148--3851Chr01:9427259..9427283 (25 bp)
CTGGTGGGCGATGAACAACCGCTTC
LOC_Os01g16610
OsAffx.9990.1.S1_at--194--8631Chr01:9427258..9427282 (25 bp)
TGGTGGGCGATGAACAACCGCTTCC
LOC_Os01g16610
OsAffx.9990.1.S1_at--499--7471Chr01:9427256..9427280 (25 bp)
GTGGGCGATGAACAACCGCTTCCAC
LOC_Os01g16610
OsAffx.9990.1.S1_at--1136--7551Chr01:9427254..9427278 (25 bp)
GGGCGATGAACAACCGCTTCCACGT
LOC_Os01g16610
OsAffx.9990.1.S1_at--623--8371Chr01:9427253..9427277 (25 bp)
GGCGATGAACAACCGCTTCCACGTC
LOC_Os01g16610
OsAffx.9990.1.S1_at--696--10631Chr01:9427047..9427071 (25 bp)
TTCGACGGCTGCAACGCGACGGAGC
LOC_Os01g16610
OsAffx.9990.1.S1_at--215--5731Chr01:9427030..9427054 (25 bp)
GACGGAGCCGGTGGCCAGGTTCGCC
LOC_Os01g16610
OsAffx.9990.1.S1_at--1061--4011Chr01:9426907..9426931 (25 bp)
CGTCATGGTGCACCCGGCGCCTGGA
LOC_Os01g16610
Target Sequence 
AACACCAGCTACACCTGGTGGGCGATGAACAACCGCTTCCACGTCGGCGACTCGCTCTACTTCAGGTACGGCGGCGGCGA
CTCGGTGCTCGTCGTCGACCGGGAGGCGTTCGACGGCTGCAACGCGACGGAGCCGGTGGCCAGGTTCGCCGGCGGCGCCA
CCACCGTGCCGCTCGGCCGCCCGGGCTTCTTCTGCTTCATCAGCGGCGCGCCGGGGCACTGCGACGGCGGCCAGAGGCTC
ATCGTGCGCGTCATGGTGCACCCGGCGCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis