Browse Element(s) Details


OsAffx.22708.2.S1_at

Description gb:NM_195791.1
DB_XREF= gi:37532941
TID=OsAffx.22708.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0027A14.25), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1877011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g092709/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g165804/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g199202/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18730Os.24831.1.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_s_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.4.S1_x_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18740Os.26886.1.S1_x_at3/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18740Os.26886.3.S1_x_at1/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18750OsAffx.6693.1.S1_at11/1110+9203138..9204482hypothetical protein
LOC_Os10g18750OsAffx.10222.1.S1_x_at2/1110+9203138..9204482hypothetical protein
LOC_Os10g18750OsAffx.21755.1.S1_x_at1/1110+9203138..9204482hypothetical protein
LOC_Os10g18750Os.51841.1.S1_x_at1/1110+9203138..9204482hypothetical protein
LOC_Os10g18760Os.8510.1.S1_at11/1110+9210026..9211586jasmonate-induced protein, putative, expressed
LOC_Os10g18770OsAffx.22708.2.S1_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.2.S1_x_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.5.S1_x_at6/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.1.S1_x_at4/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.4.S1_x_at11/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.3.S1_x_at7/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18790OsAffx.25936.2.S1_x_at11/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.1.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.7.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.5.S1_x_at2/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18800OsAffx.18294.1.S1_at10/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.23696.1.S1_x_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.988.1.S1_at1/1110+9236095..9237547hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22708.2.S1_at--2--5135Chr05:5153192..5153216 (25 bp)
GCACACAAGATCTCGGTTTATTCTT
LOC_Os05g09270
OsAffx.22708.2.S1_at--248--3314Chr05:5153193..5153217 (25 bp)
CACACAAGATCTCGGTTTATTCTTT
LOC_Os05g09270
OsAffx.22708.2.S1_at--1049--3294Chr05:5153195..5153219 (25 bp)
CACAAGATCTCGGTTTATTCTTTAG
LOC_Os05g09270
OsAffx.22708.2.S1_at--435--3235Chr05:5153197..5153221 (25 bp)
CAAGATCTCGGTTTATTCTTTAGAA
LOC_Os05g09270
OsAffx.22708.2.S1_at--519--2252Chr05:5153223..5153247 (25 bp)
AAATCAAGATTTAACCATGGCGGGA
LOC_Os05g09270
OsAffx.22708.2.S1_at--1022--3072Chr05:5153224..5153248 (25 bp)
AATCAAGATTTAACCATGGCGGGAT
LOC_Os05g09270
OsAffx.22708.2.S1_at--1134--9712Chr05:5153226..5153250 (25 bp)
TCAAGATTTAACCATGGCGGGATAT
LOC_Os05g09270
OsAffx.22708.2.S1_at--931--2792Chr05:5153228..5153252 (25 bp)
AAGATTTAACCATGGCGGGATATGC
LOC_Os05g09270
OsAffx.22708.2.S1_at--1136--1252Chr05:5153229..5153253 (25 bp)
AGATTTAACCATGGCGGGATATGCT
LOC_Os05g09270
OsAffx.22708.2.S1_at--146--3291Chr10:9212728..9212752 (25 bp)
CAAATGGTTTATGTGAAGATGAGTC
LOC_Os10g18770
OsAffx.22708.2.S1_at--25--831Chr10:9212725..9212749 (25 bp)
ATGGTTTATGTGAAGATGAGTCTCA
LOC_Os10g18770
Target Sequence 
GCACACAAGATCTCGGTTTATTCTTTAGAAAAAATCAAGATTTAACCATGGCGGGATATGCTGATGCTGGATATTTGTCA
GACCCCCATAAAGCATTGTCACAGACTAGGTATGTGTTTCTCTGTGGTGGTACAGCCATATCATGGAAGTCAACGAAGCA
GACGATGGTCGCGACATCAACAAATCACTCGGAGATTATAGCATTATTTGAAGCGAGCAAGGAATGCATGTGGTTGAGGA
GGGTGATACAACATGTACAGAATACATGTGGGCTAAATATCACACCAACTCCAATCATTATTTATGAAGATAATTCAGCT
TGTGTTGCACAAATACAAATGGTTTATGTGAAGATGAGTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22708.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis