Browse Element(s) Details


OsAffx.22708.5.S1_x_at

Description gb:NM_184756.1
DB_XREF= gi:34896601
GEN=OSJNBa0026A15.18
TID=OsAffx.22708.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0026A15.18), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0729011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g3697011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g121807/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g187706/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g165805/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g092704/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g199203/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g321191/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os02g07270OsAffx.22708.3.S1_x_at8/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07270OsAffx.22708.4.S1_x_at7/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07280NANA2+3736136..3737851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_x_at11/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_at10/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.2.S1_x_at6/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.1.S1_x_at2/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07300OsAffx.24147.1.S1_at11/112+3742581..3742987hypothetical protein
LOC_Os02g07310Os.54612.1.A1_at11/112+3748475..3755489Piwi domain containing protein, expressed
LOC_Os02g07320OsAffx.2535.1.S1_at11/112+3761051..3762806hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22708.5.S1_x_at--206--6936Chr05:5153301..5153325 (25 bp)
GTATGTGTTTCTCTGTGGTGGTACA
LOC_Os05g09270
OsAffx.22708.5.S1_x_at--1002--8655Chr02:3738467..3738491 (25 bp)
TGTGGTGGTACAGCCATCTCATGGA
LOC_Os02g07290
OsAffx.22708.5.S1_x_at--584--8597Chr05:5153357..5153380 (24 bp)
TGGTCGCGACATCAACAAATCACTT
LOC_Os05g09270
OsAffx.22708.5.S1_x_at--75--7595Chr02:3738614..3738638 (25 bp)
GGGCTGAATATCACACCAACTCCAA
LOC_Os02g07290
OsAffx.22708.5.S1_x_at--498--1278Chr05:5153499..5153523 (25 bp)
AGATAATTCAGCTTGTGTTGCACAA
LOC_Os05g09270
OsAffx.22708.5.S1_x_at--1002--6094Chr05:5153547..5153571 (25 bp)
GAGTCTCACAAAACATATATCGCCT
LOC_Os05g09270
OsAffx.22708.5.S1_x_at--511--9332Chr02:3738719..3738743 (25 bp)
TCGCCTAAATTCTTCTATATGCATG
LOC_Os02g07290
OsAffx.22708.5.S1_x_at--88--7777Chr05:5153614..5153638 (25 bp)
GGTGACTCTCACCAAGACTAGTGAA
NONE
OsAffx.22708.5.S1_x_at--113--1457Chr05:5153685..5153709 (25 bp)
AGAAGCTTGTGCATGGCATCGGTAT
NONE
OsAffx.22708.5.S1_x_at--488--10653Chr02:3738903..3738927 (25 bp)
TTCCCTGACTGTGTTCCGTTGATAT
LOC_Os02g07290
OsAffx.22708.5.S1_x_at--993--6695Chr05:5153760..5153784 (25 bp)
GTTCCGTTGATATTGATCATGCAGA
NONE
Target Sequence 
GTATGTGTTTCTCTGTGGTGGTACAGCCATCTCATGGAAGTCGACGAAGCAGACGATGGTCGCGACATCAACAAATCACT
TGGAGATTATAGCATTATTTGAAGCGAGCAAGGAATGCATGTGGTTGAGGAGGGTGATACAACATGTACAGAATACATGT
GGGCTGAATATCACACCAACTCCAACCATTATTTTTGAAGATAATTCAGCTTGTGTTGCACAAATACAAACGGGTTATGT
GAAGACGAGTCTCACAAAACATATATCGCCTAAATTCTTCTATATGCATGAATTGCAAAAGAAAGAAGAAATTAAGGTGA
CTCTCACCAAGACTAGTGAAAATCTCACAGATTTATTTACTAAGTCTTTGCCAATTAGTGTTTTTGAGAAGCTTGTGCAT
GGCATCGGTATGAGGAGGATGAGAGATGTGCACAAATCGGGGGAGCACTTCCCTGACTGTGTTCCGTTGATATTGATCAT
GCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22708.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis