Browse Element(s) Details


OsAffx.24147.1.S1_at

Description tigr:9630.m00676
TID=OsAffx.24147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0730011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os02g07270OsAffx.22708.3.S1_x_at8/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07270OsAffx.22708.4.S1_x_at7/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07280NANA2+3736136..3737851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_x_at11/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_at10/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.2.S1_x_at6/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.1.S1_x_at2/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07300OsAffx.24147.1.S1_at11/112+3742581..3742987hypothetical protein
LOC_Os02g07310Os.54612.1.A1_at11/112+3748475..3755489Piwi domain containing protein, expressed
LOC_Os02g07320OsAffx.2535.1.S1_at11/112+3761051..3762806hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24147.1.S1_at--551--3871Chr02:3742615..3742639 (25 bp)
CTGATAATATAGCAGCAGTGGGCAA
LOC_Os02g07300
OsAffx.24147.1.S1_at--215--231Chr02:3742621..3742645 (25 bp)
ATATAGCAGCAGTGGGCAAAGGAGA
LOC_Os02g07300
OsAffx.24147.1.S1_at--1113--5611Chr02:3742658..3742680 (23 bp)
GACAAAAACAGTGGCACGAGGTGGT
LOC_Os02g07300
OsAffx.24147.1.S1_at--498--8511Chr02:3742669..3742890 (25 bp)
TGGCACGAGGTGGTGATCAATCATG
LOC_Os02g07300
OsAffx.24147.1.S1_at--1057--5091Chr02:3742671..3742892 (25 bp)
GCACGAGGTGGTGATCAATCATGTT
LOC_Os02g07300
OsAffx.24147.1.S1_at--394--4071Chr02:3742873..3742895 (23 bp)
CGAGGTGGTGATCAATCATGTTGCT
LOC_Os02g07300
OsAffx.24147.1.S1_at--13--4711Chr02:3742893..3742917 (25 bp)
GCTGTTTGCCAATTTTTACCTGGAG
LOC_Os02g07300
OsAffx.24147.1.S1_at--444--6851Chr02:3742896..3742920 (25 bp)
GTTTGCCAATTTTTACCTGGAGCTG
LOC_Os02g07300
OsAffx.24147.1.S1_at--1088--10671Chr02:3742898..3742922 (25 bp)
TTGCCAATTTTTACCTGGAGCTGGA
LOC_Os02g07300
OsAffx.24147.1.S1_at--43--4391Chr02:3742900..3742924 (25 bp)
GCCAATTTTTACCTGGAGCTGGAAA
LOC_Os02g07300
OsAffx.24147.1.S1_at--774--911Chr02:3742926..3742950 (25 bp)
AGGCTGAAGATGATACCAGTATTAT
LOC_Os02g07300
Target Sequence 
CTGATAATATAGCAGCAGTGGGCAAAGGAGAAGGAAGAAGAGAGACAAAAACAGTGGCACGAGGTGGTGATCAATCATGT
TGCTGTTTGCCAATTTTTACCTGGAGCTGGAAAAAGGCTGAAGATGATACCAGTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis