Browse Element(s) Details


OsAffx.22708.1.S1_x_at

Description gb:NM_188066.1
DB_XREF= gi:34903215
TID=OsAffx.22708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1658011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g121806/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g199205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g187704/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g092702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g369702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g072902/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22708.1.S1_x_at--656--6115Chr05:5152986..5153010 (25 bp)
GAGTGACCCATTTAGACCACAGGAA
LOC_Os05g09270
OsAffx.22708.1.S1_x_at--892--10231Chr01:9412206..9412230 (25 bp)
TATTGGGCCCTGAATGTCCATATTT
LOC_Os01g16580
OsAffx.22708.1.S1_x_at--381--8777Chr05:5153069..5153093 (25 bp)
TGTATCTCGCGAATGGTACCAGGCC
LOC_Os05g09270
OsAffx.22708.1.S1_x_at--1069--6971Chr01:9412266..9412290 (25 bp)
GTACCAGGCCCGATATTGCATTTGC
LOC_Os01g16580
OsAffx.22708.1.S1_x_at--1048--56Chr02:3738249..3738273 (25 bp)
ATTGCATTTGCTGTTAACCTACTTG
NONE
OsAffx.22708.1.S1_x_at--657--9872Chr01:9412299..9412323 (25 bp)
TACTTGCAAGGTTCAGTTCGGCTCC
LOC_Os01g16580
OsAffx.22708.1.S1_x_at--168--3075Chr02:3738323..3738347 (25 bp)
AATCTTCCGTTATTTACGTGGCACA
NONE
OsAffx.22708.1.S1_x_at--181--6411Chr01:9412152..9412431 (25 bp)
GATCTCGATTTGACCATGACGGGAT
LOC_Os01g16580
OsAffx.22708.1.S1_x_at--1013--4712Chr01:9412440..9412464 (25 bp)
GCTGGATATTTGTCAGACCCTCATA
LOC_Os01g16580
OsAffx.22708.1.S1_x_at--1001--8655Chr02:3738467..3738491 (25 bp)
TGTGGTGGTACAGCCATCTCATGGA
LOC_Os02g07290
OsAffx.22708.1.S1_x_at--76--7595Chr02:3738614..3738638 (25 bp)
GGGCTGAATATCACACCAACTCCAA
LOC_Os02g07290
Target Sequence 
GAGTGACCCATTTAGACCACAGGAAAATAACCAGGAATTATTGGGCCCTGAATGTCCATATTTAAGCGCTATTGGAGCTT
TAATGTATCTCGCGAATGGTACCAGGCCCGATATTGCATTTGCTGTTAACCTACTTGCAAGGTTCAGTTCGGCTCCTACC
AAACGGCATTGGAATGGCGTTAAGAAAATCTTCCGTTATTTACGTGGCACACAAGATCTCGATTTGACCATGACGGGATA
TGCTGATGCTGGATATTTGTCAGACCCTCATAAAGCATTGTCACAGATTGGGTATGTGTTTCTCTGTGGTGGTACAGCCA
TCTCATGGAAGTCAACGAAGCAGACGATGGTCGCGACATCAACAAATCACTCGGAGATTATAGAATTATTTGAAGCGAGC
AAGGAATGCATGTGGTTGAGGAGGGTGATACAACATGTACAGAATACATGTGGGCTGAATATCACACCAACTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22708.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis