Browse Element(s) Details


Os.37994.1.S1_at

Description gb:AK100277.1
DB_XREF= gi:32985486
TID=Os.37994.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073H16, full insert sequence.
FL= gb:AK100277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1655011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed
LOC_Os01g16530OsAffx.23276.1.S1_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.5307.1.S1_s_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.36108.2.S1_x_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37994.1.S1_at--730--4891Chr01:9390973..9390997 (25 bp)
GCTTACTGCTAAATGTTTACAATCA
LOC_Os01g16550
Os.37994.1.S1_at--159--331Chr01:9390937..9390961 (25 bp)
ATACTGTAAAGTTCTCTTCTCATAC
LOC_Os01g16550
Os.37994.1.S1_at--1036--111Chr01:9390903..9390927 (25 bp)
ATTAAGGCGAAAGCAATAGACCCAT
LOC_Os01g16550
Os.37994.1.S1_at--356--291Chr01:9390888..9390912 (25 bp)
ATAGACCCATGCGACGTACGCGAGG
LOC_Os01g16550
Os.37994.1.S1_at--164--4571Chr01:9390842..9390866 (25 bp)
GCGCCGTACAACTCCGAAGATGCAA
LOC_Os01g16550
Os.37994.1.S1_at--359--1291Chr01:9390810..9390834 (25 bp)
AGATGCATCCTGTGAGCAATGGTCA
LOC_Os01g16550
Os.37994.1.S1_at--164--3211Chr01:9390794..9390818 (25 bp)
CAATGGTCAGGCTTGTAGAGTTGCA
LOC_Os01g16550
Os.37994.1.S1_at--541--8751Chr01:9390781..9390805 (25 bp)
TGTAGAGTTGCATATACCATTTGGG
LOC_Os01g16550
Os.37994.1.S1_at--254--611Chr01:9390747..9390771 (25 bp)
ATGCGTGTGTGCGAGAGAGATAATA
LOC_Os01g16550
Os.37994.1.S1_at--5--791Chr01:9390687..9390711 (25 bp)
ATGTGAATGGACGTGCTCCAGACCC
LOC_Os01g16550
Os.37994.1.S1_at--16--9091Chr01:9390674..9390698 (25 bp)
TGCTCCAGACCCACGATTTAAGTCA
LOC_Os01g16550
Target Sequence 
GCTTACTGCTAAATGTTTACAATCAATCAACGGTTAATACTGTAAAGTTCTCTTCTCATACATACAAATAATTAAGGCGA
AAGCAATAGACCCATGCGACGTACGCGAGGCACACGCACGGGTTTCGCCACGCGCCGTACAACTCCGAAGATGCAAGTAG
TGAAGATGCATCCTGTGAGCAATGGTCAGGCTTGTAGAGTTGCATATACCATTTGGGGCTTTTGGGATGCGTGTGTGCGA
GAGAGATAATAGCATATGTTTATTGAGAAGTAAGAGATGGTCGAACATGTGAATGGACGTGCTCCAGACCCACGATTTAA
GTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis