Browse Element(s) Details


Os.4654.1.S1_at

Description gb:AK071543.1
DB_XREF= gi:32981566
TID=Os.4654.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100F02, full insert sequence.
FL= gb:AK071543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1651010/11expressed protein
LOC_Os06g503801/11protein phosphatase 2C homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16460OsAffx.18485.4.S1_at9/111+9341659..9344181hypothetical protein
LOC_Os01g16470Os.43704.1.S1_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16470Os.43704.1.S1_x_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16480OsAffx.31069.1.S1_at2/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480OsAffx.31069.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16490NANA1+9358131..9359378retrotransposon protein, putative, unclassified
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed
LOC_Os01g16530OsAffx.23276.1.S1_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.5307.1.S1_s_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.36108.2.S1_x_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4654.1.S1_at--307--4351Chr01:9369357..9369381 (25 bp)
CCAGGTTCACCAATGTGGCGTGCAA
LOC_Os01g16510
Os.4654.1.S1_at--422--10231Chr01:9369388..9369412 (25 bp)
TATTGGTTGGATCAGCTCTTGGTGC
LOC_Os01g16510
Os.4654.1.S1_at--577--9071Chr06:30495592..30495627 (24 bp)
TGCTTTCCCCTTGGTTGGATACAGT
LOC_Os06g50380
Os.4654.1.S1_at--947--291Chr01:9370114..9370138 (25 bp)
ATAGAACGACTTGGGCGCAGCCTAA
LOC_Os01g16510
Os.4654.1.S1_at--1108--9751Chr01:9370183..9370207 (25 bp)
TAATCTGTGTGCGTTCCTGAAGACC
LOC_Os01g16510
Os.4654.1.S1_at--29--7591Chr01:9370228..9370252 (25 bp)
GGGCTGCACTACTTCAATTTTTTCT
LOC_Os01g16510
Os.4654.1.S1_at--930--171Chr01:9370244..9370268 (25 bp)
ATTTTTTCTTCTTTCATGTGCCTCA
LOC_Os01g16510
Os.4654.1.S1_at--681--9191Chr01:9370262..9370286 (25 bp)
TGCCTCACGCTGTAGTGCTGTCAAA
LOC_Os01g16510
Os.4654.1.S1_at--721--6291Chr01:9370378..9370402 (25 bp)
GATGATGCTTGTGCCATTACAGTTT
LOC_Os01g16510
Os.4654.1.S1_at--1056--1191Chr01:9370398..9370422 (25 bp)
AGTTTGTGCTGAATTTACCCTCGGT
LOC_Os01g16510
Os.4654.1.S1_at--676--10471Chr01:9370412..9370436 (25 bp)
TTACCCTCGGTAATTCTTCAGTTCA
LOC_Os01g16510
Target Sequence 
CCAGGTTCACCAATGTGGCGTGCAAGGAATGTATTGGTTGGATCAGCTCTTGGTGCTGGAGTCTGCTTTCCCCTTGGTTG
GATACAGTTGAAGCTGGCAGAGAAAGCCAATCTTGAGATGGCAAGTTCGAAACCAACAGATTTGGTGGAGGAACAAGGTA
ATCAAAGCGGCGTTGGTGCCGCTATAGAACGACTTGGGCGCAGCCTAAAGAAGTAAAAATTTGGACCATCGAAGGACCTT
TTTTTTTNCTCATAATCTGTGTGCGTTCCTGAAGACCGCAGGAGGNAACCTGTTTCATGGGCTGCACTACTTCAATTTTT
TCTTCTTTCATGTGCCTCACGCTGTAGTGCTGTCAAACTTTGAAGCAGTAACAGCAAGGGCCACACGGAGNCCTCCGTTG
TGGGGGAAAAAAGAGCATTTTTGATAAAAATATCGTATTCGTTGGATGTGATGATGCTTGTGCCATTACAGTTTGTGCTG
AATTTACCCTCGGTAATTCTTCAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis