Browse Element(s) Details


OsAffx.18485.4.S1_at

Description tigr:9629.m01640
TID=OsAffx.18485.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g164609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16414Os.37639.1.S1_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.1.S1_a_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.2.S1_x_at10/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16430Os.6850.1.S1_at11/111+9322447..9326109Cystatin, putative, expressed
LOC_Os01g16440NANA1+9331527..9332044hypothetical protein
LOC_Os01g16450Os.11558.1.S1_at11/111+9336593..9339018Peroxidase family protein, expressed
LOC_Os01g16460OsAffx.18485.4.S1_at9/111+9341659..9344181hypothetical protein
LOC_Os01g16470Os.43704.1.S1_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16470Os.43704.1.S1_x_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16480OsAffx.31069.1.S1_at2/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480OsAffx.31069.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16490NANA1+9358131..9359378retrotransposon protein, putative, unclassified
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18485.4.S1_at--131--6191Chr01:9342725..9342749 (25 bp)
GAGGAACACCGAGATACAGCCGGCA
LOC_Os01g16460
OsAffx.18485.4.S1_at--698--1271Chr01:9342714..9342738 (25 bp)
AGATACAGCCGGCAAGCATGGAGTC
LOC_Os01g16460
OsAffx.18485.4.S1_at--6--4011NONE
CGTCGACTTGCGGTGTCAACAGACC
NONE
OsAffx.18485.4.S1_at--85--4111NONE
CGACTTGCGGTGTCAACAGACCGGT
NONE
OsAffx.18485.4.S1_at--279--1771Chr01:9342055..9342079 (25 bp)
ACCGGCCGGCGAGTGTACAAGTACG
LOC_Os01g16460
OsAffx.18485.4.S1_at--693--9851Chr01:9342040..9342064 (25 bp)
TACAAGTACGAGCTCTCTCCGCGGT
LOC_Os01g16460
OsAffx.18485.4.S1_at--780--6951Chr01:9342035..9342059 (25 bp)
GTACGAGCTCTCTCCGCGGTTGGTA
LOC_Os01g16460
OsAffx.18485.4.S1_at--407--9291Chr01:9342023..9342047 (25 bp)
TCCGCGGTTGGTACCGGCTGTACTC
LOC_Os01g16460
OsAffx.18485.4.S1_at--769--1451Chr01:9341822..9341846 (25 bp)
AGAAGATCCGCGACGCTTGGAGCAA
LOC_Os01g16460
OsAffx.18485.4.S1_at--347--1291Chr01:9341819..9341843 (25 bp)
AGATCCGCGACGCTTGGAGCAAGCT
LOC_Os01g16460
OsAffx.18485.4.S1_at--240--4091Chr01:9341812..9341836 (25 bp)
CGACGCTTGGAGCAAGCTCTCTCCG
LOC_Os01g16460
Target Sequence 
GAGGAACACCGAGATACAGCCGGCAAGCATGGAGTCGAACGTCGACTTGCGGTGTCAACAGACCGGTGCACCGGCCGGCG
AGTGTACAAGTACGAGCTCTCTCCGCGGTTGGTACCGGCTGTACTCGAGGTCGATGGACGTGTGCAAGCTCGTCGTGAAC
GACGGGTTTGGCCCGGCGCTCCCCAGCGGCGGCGCTCTGCCGGAGCGGGACGTGTACGACACCGACCAGTACATGCTGGC
GCTGATCTACCACACGCGGATGCGGCGGTATGAGTGCCTCACCGGCGAGAGAATGGCGAGGAAGAAGATCCGCGACGCTT
GGAGCAAGCTCTCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18485.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis