Browse Element(s) Details


Os.37639.1.S1_a_at

Description gb:AK068395.1
DB_XREF= gi:32978413
TID=Os.37639.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151C11, full insert sequence.
FL= gb:AK068395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1641411/11Actin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16380OsAffx.11078.1.S1_s_at11/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.11078.1.S1_at9/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.23273.1.S1_x_at1/111+9298916..9300895hypothetical protein
LOC_Os01g16390OsAffx.23273.1.S1_x_at2/111+9302886..9306623NB-ARC domain containing protein
LOC_Os01g16400Os.43707.1.S1_at11/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.23273.1.S1_x_at2/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400Os.49478.1.S1_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.11078.1.S1_s_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16414Os.37639.1.S1_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.1.S1_a_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.2.S1_x_at10/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16430Os.6850.1.S1_at11/111+9322447..9326109Cystatin, putative, expressed
LOC_Os01g16440NANA1+9331527..9332044hypothetical protein
LOC_Os01g16450Os.11558.1.S1_at11/111+9336593..9339018Peroxidase family protein, expressed
LOC_Os01g16460OsAffx.18485.4.S1_at9/111+9341659..9344181hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0008283biological_processcell proliferation
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0009910biological_processnegative regulation of flower development
GO:0030029biological_processactin filament-based process
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37639.1.S1_a_at--293--10431Chr01:9316520..9316544 (25 bp)
TTATCCTGACAGGAGGAAGCACGCT
LOC_Os01g16414
Os.37639.1.S1_a_at--38--571Chr01:9316518..9316542 (25 bp)
ATCCTGACAGGAGGAAGCACGCTAT
LOC_Os01g16414
Os.37639.1.S1_a_at--541--4271Chr01:9316516..9316540 (25 bp)
CCTGACAGGAGGAAGCACGCTATTC
LOC_Os01g16414
Os.37639.1.S1_a_at--1088--5631Chr01:9316513..9316537 (25 bp)
GACAGGAGGAAGCACGCTATTCCCT
LOC_Os01g16414
Os.37639.1.S1_a_at--1091--2111Chr01:9316512..9316536 (25 bp)
ACAGGAGGAAGCACGCTATTCCCTC
LOC_Os01g16414
Os.37639.1.S1_a_at--661--6191Chr01:9316508..9316532 (25 bp)
GAGGAAGCACGCTATTCCCTCGATT
LOC_Os01g16414
Os.37639.1.S1_a_at--131--8191Chr01:9316506..9316530 (25 bp)
GGAAGCACGCTATTCCCTCGATTCA
LOC_Os01g16414
Os.37639.1.S1_a_at--143--5391Chr01:9316505..9316529 (25 bp)
GAAGCACGCTATTCCCTCGATTCAC
LOC_Os01g16414
Os.37639.1.S1_a_at--495--4871Chr01:9316498..9316522 (25 bp)
GCTATTCCCTCGATTCACCGAAAGA
LOC_Os01g16414
Os.37639.1.S1_a_at--87--3691Chr01:9316497..9316521 (25 bp)
CTATTCCCTCGATTCACCGAAAGAT
LOC_Os01g16414
Os.37639.1.S1_a_at--869--10211Chr01:9316496..9316520 (25 bp)
TATTCCCTCGATTCACCGAAAGATT
LOC_Os01g16414
Target Sequence 
TTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37639.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis