Browse Element(s) Details


OsAffx.23273.1.S1_x_at

Description tigr:9629.m01630
TID=OsAffx.23273.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1636011/11hypothetical protein
LOC_Os01g163902/11NB-ARC domain containing protein
LOC_Os01g164002/11NB-ARC domain containing protein, expressed
LOC_Os01g163801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16330Os.21056.1.S1_at11/111+9255941..9261124UBA/TS-N domain containing protein, expressed
LOC_Os01g16340Os.38263.2.S1_x_at10/111+9261793..9265267expressed protein
LOC_Os01g16340Os.38263.1.S1_at10/111+9261793..9265267expressed protein
LOC_Os01g16350Os.72.1.S1_s_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_x_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16360OsAffx.23273.1.S1_x_at11/111+9285642..9285884hypothetical protein
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16380OsAffx.11078.1.S1_s_at11/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.11078.1.S1_at9/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.23273.1.S1_x_at1/111+9298916..9300895hypothetical protein
LOC_Os01g16390OsAffx.23273.1.S1_x_at2/111+9302886..9306623NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23273.1.S1_x_at--587--9151Chr01:9285679..9285703 (25 bp)
TGCGCATCCTCCTGGGGAAGCTGGC
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--362--8351Chr01:9285700..9285724 (25 bp)
TGGCGGACGTCCTCGCCGGCAGGTA
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--907--5773Chr01:9285747..9285771 (25 bp)
GACGAGATCCAGGAGCTCAAGGACG
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--938--4071Chr01:9285770..9285794 (25 bp)
CGAGCTCGAGAGCATGAACGCCTGC
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--473--1591Chr01:9285772..9285796 (25 bp)
AGCTCGAGAGCATGAACGCCTGCCT
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--1049--9374Chr01:9311070..9311094 (25 bp)
TCGAGAGCATGAACGCCTGCCTCCG
LOC_Os01g16400
OsAffx.23273.1.S1_x_at--139--7231Chr01:9285822..9285846 (25 bp)
GTCGACGACCGCAACGAGCAGGTGA
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--596--9371Chr01:9285823..9285847 (25 bp)
TCGACGACCGCAACGAGCAGGTGAA
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--452--5771Chr01:9285825..9285849 (25 bp)
GACGACCGCAACGAGCAGGTGAATG
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--309--4091Chr01:9285827..9285851 (25 bp)
CGACCGCAACGAGCAGGTGAATGCA
LOC_Os01g16360
OsAffx.23273.1.S1_x_at--94--4231Chr01:9285830..9285854 (25 bp)
CCGCAACGAGCAGGTGAATGCAGCC
LOC_Os01g16360
Target Sequence 
TGCGCATCCTCCTGGGGAAGCTGGCGGACGTCCTCGCCGGCAGGTACGCGCTCCTCCTCGGCGCGCGCGACGAGATCCAG
GAGCTCAAGGACGAGCTCGAGAGCATGAACGCCTGCCTCCGCGACCTCGCCGCCGCCGGCGACGTCGACGACCGCAACGA
GCAGGTGAATGCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23273.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis