Browse Element(s) Details


Os.38263.2.S1_x_at

Description gb:NM_188034.1
DB_XREF= gi:34903151
TID=Os.38263.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1634010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16300NANA1+9240343..9240627hypothetical protein
LOC_Os01g16310Os.68.1.S1_at11/111+9242430..9250049Glycosyl hydrolases family 31 protein, expressed
LOC_Os01g16320OsAffx.22199.2.S1_x_at11/111+9250836..9253424uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g16330Os.21056.1.S1_at11/111+9255941..9261124UBA/TS-N domain containing protein, expressed
LOC_Os01g16340Os.38263.2.S1_x_at10/111+9261793..9265267expressed protein
LOC_Os01g16340Os.38263.1.S1_at10/111+9261793..9265267expressed protein
LOC_Os01g16350Os.72.1.S1_s_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_x_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16360OsAffx.23273.1.S1_x_at11/111+9285642..9285884hypothetical protein
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38263.2.S1_x_at--283--1911Chr01:9262198..9262310 (25 bp)
ACGGGTCCTCGCAGGTGTTTGATAA
LOC_Os01g16340
Os.38263.2.S1_x_at--162--7751Chr01:9262299..9262323 (25 bp)
GGTGTTTGATAACCCGTTCGTGCAC
LOC_Os01g16340
Os.38263.2.S1_x_at--623--7331Chr01:9262318..9262342 (25 bp)
GTGCACATAGTGGTCTCGGAGTTCA
LOC_Os01g16340
Os.38263.2.S1_x_at--114--6071Chr01:9262336..9262360 (25 bp)
GAGTTCATCCGGAAGCGCTTGGACA
LOC_Os01g16340
Os.38263.2.S1_x_at--1063--5631Chr01:9262357..9262381 (25 bp)
GACACCAAATCCATCATCGAGCTGC
LOC_Os01g16340
Os.38263.2.S1_x_at--684--4551Chr01:9262396..9262641 (25 bp)
GCGCCTCCTGGAACTACGGCATATA
LOC_Os01g16340
Os.38263.2.S1_x_at--853--5331Chr01:9262646..9262670 (25 bp)
GAAGTCAAGCCCATTTCCAACTGAT
LOC_Os01g16340
Os.38263.2.S1_x_at--1156--831NONE
ATGGAAAGCTGGACTATAGCAGGCA
NONE
Os.38263.2.S1_x_at--50--2691Chr01:9264065..9264089 (25 bp)
AAGCTGCTTCAATCTTGTTCCCGGA
LOC_Os01g16340
Os.38263.2.S1_x_at--757--2911Chr01:9264091..9264115 (25 bp)
AAGGCCCTGTCCCTGAATAGGAAGA
LOC_Os01g16340
Os.38263.2.S1_x_at--186--5931Chr01:9264880..9264904 (25 bp)
GAGCAGAGGCCCTTTTGTTAGCGGC
LOC_Os01g16340
Target Sequence 
ACGGGTCCTCGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAA
TCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAAC
TGATGGAAAGCTGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAAC
ATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38263.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis