Browse Element(s) Details


Os.72.1.S1_x_at

Description gb:AK068875.1
DB_XREF= gi:32978900
TID=Os.72.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.72 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170O18, full insert sequence.
FL= gb:AK068875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1635011/11Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os08g130201/11Speckle-type POZ protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16300NANA1+9240343..9240627hypothetical protein
LOC_Os01g16310Os.68.1.S1_at11/111+9242430..9250049Glycosyl hydrolases family 31 protein, expressed
LOC_Os01g16320OsAffx.22199.2.S1_x_at11/111+9250836..9253424uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g16330Os.21056.1.S1_at11/111+9255941..9261124UBA/TS-N domain containing protein, expressed
LOC_Os01g16340Os.38263.2.S1_x_at10/111+9261793..9265267expressed protein
LOC_Os01g16340Os.38263.1.S1_at10/111+9261793..9265267expressed protein
LOC_Os01g16350Os.72.1.S1_s_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_x_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16360OsAffx.23273.1.S1_x_at11/111+9285642..9285884hypothetical protein
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006551biological_processleucine metabolism
GO:0005739cellular_componentmitochondrion
GO:0004419molecular_functionhydroxymethylglutaryl-CoA lyase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.72.1.S1_x_at--792--6211Chr01:9266268..9266292 (25 bp)
GAGGCTGTTATGTTCTTTGTTCCAA
LOC_Os01g16350
Os.72.1.S1_x_at--575--971Chr01:9266243..9266267 (25 bp)
AGGAGAAGCTTGCTGTCCATTTCCA
LOC_Os01g16350
Os.72.1.S1_x_at--1071--9831Chr01:9266211..9266235 (25 bp)
TACGGCCAATCGCTTTCAAATATCC
LOC_Os01g16350
Os.72.1.S1_x_at--273--10831Chr01:9265910..9265934 (25 bp)
TTGTGGACTCTTCCGTAGCGGGCCT
LOC_Os01g16350
Os.72.1.S1_x_at--57--1911Chr01:9265835..9265859 (25 bp)
ACGTGGTGTACATGCTGAACGGGCT
LOC_Os01g16350
Os.72.1.S1_x_at--1042--1491Chr01:9265803..9265827 (25 bp)
AGCACCAATGTCGACCTGGGCAAGG
LOC_Os01g16350
Os.72.1.S1_x_at--430--8472Chr08:7729244..7729384 (25 bp)
TGGCCGCCGGCGAGTTCATCTGCAA
LOC_Os08g13020
Os.72.1.S1_x_at--776--8611Chr01:9265732..9265756 (25 bp)
TGGGTCCAAGGCAGCTATCGCTTTG
LOC_Os01g16350
Os.72.1.S1_x_at--992--1471Chr01:9265704..9265728 (25 bp)
AGCAAGGTTGCTACTGCCAACGCAT
LOC_Os01g16350
Os.72.1.S1_x_at--835--6151Chr01:9265670..9265694 (25 bp)
GAGGTTCACTAACATTCACTGATGC
LOC_Os01g16350
Os.72.1.S1_x_at--600--9691Chr01:9265655..9265679 (25 bp)
TCACTGATGCAGTCTTTCGGAGGAT
LOC_Os01g16350
Target Sequence 
GAGGCTGTTATGTTCTTTGTTCCAAAGGAGAAGCTTGCTGTCCATTTCCACGATACCTACGGCCAATCGCTTTCAAATAT
CCTCATCTCTCTCCANATGGGTGTGAGCNTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGNTGCCCATACGCGAAAGGT
GCATCGGGCAATGTGGCGACGGAGGACGTGGTGTACATGCTGAACGGGCTGGGGATCAGCACCAATGTCGACCTGGGCAA
GGTGATGGCCGCCGGCGAGTTCATCTGCAACCATNTGGGGCGCCAGTNTGGGTCCAAGGCAGCTATCGCTTTGGGAAGCA
AGGTTGCTACTGCCAACGCATCCNNAAACTGTGAGGTTCACTAACATTCACTGATGCAGTCTTTCGGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.72.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis