Browse Element(s) Details


Os.68.1.S1_at

Description gb:NM_188031.1
DB_XREF= gi:34903145
TID=Os.68.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.68 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1631011/11Glycosyl hydrolases family 31 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16280NANA1+9217884..9218306hypothetical protein
LOC_Os01g16290Os.37563.1.S1_at11/111+9222015..9233827DNA gyrase, B subunit family protein, expressed
LOC_Os01g16300NANA1+9240343..9240627hypothetical protein
LOC_Os01g16310Os.68.1.S1_at11/111+9242430..9250049Glycosyl hydrolases family 31 protein, expressed
LOC_Os01g16320OsAffx.22199.2.S1_x_at11/111+9250836..9253424uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g16330Os.21056.1.S1_at11/111+9255941..9261124UBA/TS-N domain containing protein, expressed
LOC_Os01g16340Os.38263.2.S1_x_at10/111+9261793..9265267expressed protein
LOC_Os01g16340Os.38263.1.S1_at10/111+9261793..9265267expressed protein
LOC_Os01g16350Os.72.1.S1_s_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_x_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.68.1.S1_at--618--6231Chr01:9248735..9248759 (25 bp)
GATGGCTGGAGCTCAGCGCCTTCAC
LOC_Os01g16310
Os.68.1.S1_at--638--9811Chr01:9248922..9248946 (25 bp)
TAACAAGCCAGGATCCAACTGCCAG
LOC_Os01g16310
Os.68.1.S1_at--251--3271Chr01:9248937..9248961 (25 bp)
CAACTGCCAGTTCTACTCCAATAAC
LOC_Os01g16310
Os.68.1.S1_at--58--4571Chr01:9248980..9249004 (25 bp)
GCGCGCTGCGCAAAGATCTACAAAG
LOC_Os01g16310
Os.68.1.S1_at--263--2191Chr01:9248999..9249023 (25 bp)
ACAAAGCCTGGGAGTTCTACCGGAT
LOC_Os01g16310
Os.68.1.S1_at--989--9531Chr01:9249014..9249037 (24 bp)
TCTACCGGATCCAGCTCGTCGAGGA
LOC_Os01g16310
Os.68.1.S1_at--108--2011Chr01:9249670..9249694 (25 bp)
ACTACCCGGAGGATCAGCGTGTGCA
LOC_Os01g16310
Os.68.1.S1_at--571--6311Chr01:9249698..9249722 (25 bp)
GATGACATACCAACAATTCCTGGTT
LOC_Os01g16310
Os.68.1.S1_at--752--10291Chr01:9249783..9249807 (25 bp)
TTTCCCATGTCAGATGGCGGCTTAT
LOC_Os01g16310
Os.68.1.S1_at--682--811Chr01:9249806..9249830 (25 bp)
ATGGAAGCACGTTTGGACCGGCGAT
LOC_Os01g16310
Os.68.1.S1_at--926--10651Chr01:9249915..9249939 (25 bp)
TTCCCGGCTGTGTTTGTGAGAGTTG
LOC_Os01g16310
Target Sequence 
GATGGCTGGAGCTCAGCGCCTTCACCGTCGTCTTCCGCACCCACGAGGGTAACAAGCCAGGATCCAACTGCCAGTTCTAC
TCCAATAACCGCACGCTCGCGCATTTCGCGCGCTGCGCAAAGATCTACAAAGCCTGGGAGTTCTACCGGATCCAGCTCGT
CGAGGAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTACCCGGAGGATCAGCGTGTGCAGAAGA
TGACATACCAACAATTCCTGGTTGGGACAGAGATGCTGGTGGTGCCGGTCTTGGACAAGGGGAGGAGCACGGTGACCGCC
TACTTTCCCATGTCAGATGGCGGCTTATGGAAGCACGTTTGGACCGGCGATGAGTTCGGTGGTCGTACGAGTAGAGGGGG
TGTAGGAGAGGGGATGTCGCATGGGTCTGAGGCCGAGGTTGAGGCCCGGATTGGCTTCCCGGCTGTGTTTGTGAGAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.68.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis