Browse Element(s) Details


OsAffx.22199.2.S1_x_at

Description tigr:9629.m01625
TID=OsAffx.22199.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1632011/11uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g596901/11uncharacterized plant-specific domain TIGR01570 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16290Os.37563.1.S1_at11/111+9222015..9233827DNA gyrase, B subunit family protein, expressed
LOC_Os01g16300NANA1+9240343..9240627hypothetical protein
LOC_Os01g16310Os.68.1.S1_at11/111+9242430..9250049Glycosyl hydrolases family 31 protein, expressed
LOC_Os01g16320OsAffx.22199.2.S1_x_at11/111+9250836..9253424uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g16330Os.21056.1.S1_at11/111+9255941..9261124UBA/TS-N domain containing protein, expressed
LOC_Os01g16340Os.38263.2.S1_x_at10/111+9261793..9265267expressed protein
LOC_Os01g16340Os.38263.1.S1_at10/111+9261793..9265267expressed protein
LOC_Os01g16350Os.72.1.S1_s_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_x_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22199.2.S1_x_at--228--3991Chr01:9251386..9251410 (25 bp)
CGGGCGGCGCCGTCAGGAACCACTT
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--244--2831Chr01:9251237..9251261 (25 bp)
AAGTTCATCCAGGACGTCAGCGCCG
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--1132--9151Chr01:9251203..9251227 (25 bp)
TGCGCGTCACGCTCGAGTGCGACAA
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--252--9691Chr01:9251197..9251221 (25 bp)
TCACGCTCGAGTGCGACAAGCAGCA
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--457--1871Chr01:9251035..9251059 (25 bp)
ACGAGCGGGTGATGCGGCTGCTGCA
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--964--9111Chr01:9251017..9251041 (25 bp)
TGCTGCACGCCATGTCCATGGGCGC
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--136--6152Chr03:33933383..33933402 (20 bp)
GAGGTGACGTACATGCGCGCGCACT
LOC_Os03g59690
OsAffx.22199.2.S1_x_at--340--611Chr01:9250928..9250952 (25 bp)
ATGCGCGCGCACTTCGACCGCGTGG
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--455--5811Chr01:9250892..9250916 (25 bp)
GACGCCGAGACGTACTACATGCACA
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--1152--9891Chr01:9250880..9250904 (25 bp)
TACTACATGCACAACCCGGAGGGAT
LOC_Os01g16320
OsAffx.22199.2.S1_x_at--957--651Chr01:9250874..9250898 (25 bp)
ATGCACAACCCGGAGGGATGCGCCA
LOC_Os01g16320
Target Sequence 
CGGGCGGCGCCGTCAGGAACCACTTCCACGGCTCCACCCGCACCACGGGGACGCTCTACGGCCACCGCCGCGCGCGCATC
ACCATCGCCTTCCACGACAGCCCGGGCAGCCCGCCGGCGCTGCTGCTCGACATCGCCGTCCCCACCGCCAAGTTCATCCA
GGACGTCAGCGCCGCCGGCATGGTGCGCGTCACGCTCGAGTGCGACAAGCAGCAGCATCAGCCGCCGCCGCACGCGCACC
CGCCGGGGGATCCCCTCCCGCCGCGGCGGCTGCTGGACGAGCCGGTGTGGTCGGCGGAGGTGAACGGCGAGAGCGTCGGG
TACGCGGCGCGGCGGGAGGCGACGGAGGCGGACGAGCGGGTGATGCGGCTGCTGCACGCCATGTCCATGGGCGCCGGCGT
GCTCCCCGCCGTCGCCGCCGACGCGCCGACGTCGGCGGCGGACGGCGAGGTGACGTACATGCGCGCGCACTTCGACCGCG
TGGTGGGGTCCAAGGACGCCGAGACGTACTACATGCACAACCCGGAGGGATGCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22199.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis