Browse Element(s) Details


Os.72.1.S1_at

Description gb:AK068875.1
DB_XREF= gi:32978900
TID=Os.72.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.72 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170O18, full insert sequence.
FL= gb:AK068875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1635011/11Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16300NANA1+9240343..9240627hypothetical protein
LOC_Os01g16310Os.68.1.S1_at11/111+9242430..9250049Glycosyl hydrolases family 31 protein, expressed
LOC_Os01g16320OsAffx.22199.2.S1_x_at11/111+9250836..9253424uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g16330Os.21056.1.S1_at11/111+9255941..9261124UBA/TS-N domain containing protein, expressed
LOC_Os01g16340Os.38263.2.S1_x_at10/111+9261793..9265267expressed protein
LOC_Os01g16340Os.38263.1.S1_at10/111+9261793..9265267expressed protein
LOC_Os01g16350Os.72.1.S1_s_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_x_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16360OsAffx.23273.1.S1_x_at11/111+9285642..9285884hypothetical protein
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006551biological_processleucine metabolism
GO:0005739cellular_componentmitochondrion
GO:0004419molecular_functionhydroxymethylglutaryl-CoA lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.72.1.S1_at--72--1971Chr01:9265675..9265699 (25 bp)
ACTGTGAGGTTCACTAACATTCACT
LOC_Os01g16350
Os.72.1.S1_at--278--8891Chr01:9265671..9265695 (25 bp)
TGAGGTTCACTAACATTCACTGATG
LOC_Os01g16350
Os.72.1.S1_at--834--6151Chr01:9265670..9265694 (25 bp)
GAGGTTCACTAACATTCACTGATGC
LOC_Os01g16350
Os.72.1.S1_at--652--7891Chr01:9265668..9265692 (25 bp)
GGTTCACTAACATTCACTGATGCAG
LOC_Os01g16350
Os.72.1.S1_at--905--6751Chr01:9265667..9265691 (25 bp)
GTTCACTAACATTCACTGATGCAGT
LOC_Os01g16350
Os.72.1.S1_at--441--9691Chr01:9265665..9265689 (25 bp)
TCACTAACATTCACTGATGCAGTCT
LOC_Os01g16350
Os.72.1.S1_at--35--2511Chr01:9265660..9265684 (25 bp)
AACATTCACTGATGCAGTCTTTCGG
LOC_Os01g16350
Os.72.1.S1_at--667--3591Chr01:9265658..9265682 (25 bp)
CATTCACTGATGCAGTCTTTCGGAG
LOC_Os01g16350
Os.72.1.S1_at--599--9691Chr01:9265655..9265679 (25 bp)
TCACTGATGCAGTCTTTCGGAGGAT
LOC_Os01g16350
Os.72.1.S1_at--519--3331Chr01:9265654..9265678 (25 bp)
CACTGATGCAGTCTTTCGGAGGATG
LOC_Os01g16350
Os.72.1.S1_at--924--8731Chr01:9265517..9265541 (25 bp)
TGTAAGATCAATTTTGCCAGAAATA
LOC_Os01g16350
Target Sequence 
ACTGTGAGGTTCACTAACATTCACTGATGCAGTCTTTCGGAGGATGCGTTTCAGACATACAAATGTATACGATAAATAAA
GNCGAAATTGGTTCCATGCTATTCNAGTGACCTGGGATTTGTCGGTGCTAGAAAACTAAAATCGGGATCGTTGGGTGATG
TAAGATCAATTTTGCCAGAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.72.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis