Browse Element(s) Details


OsAffx.11078.1.S1_s_at

Description gb:NM_188043.1
DB_XREF= gi:34903169
TID=OsAffx.11078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1638011/11hypothetical protein
LOC_Os01g164001/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16360OsAffx.23273.1.S1_x_at11/111+9285642..9285884hypothetical protein
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16380OsAffx.11078.1.S1_s_at11/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.11078.1.S1_at9/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.23273.1.S1_x_at1/111+9298916..9300895hypothetical protein
LOC_Os01g16390OsAffx.23273.1.S1_x_at2/111+9302886..9306623NB-ARC domain containing protein
LOC_Os01g16400Os.43707.1.S1_at11/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.23273.1.S1_x_at2/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400Os.49478.1.S1_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.11078.1.S1_s_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16414Os.37639.1.S1_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.1.S1_a_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.2.S1_x_at10/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16430Os.6850.1.S1_at11/111+9322447..9326109Cystatin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11078.1.S1_s_at--256--2891Chr01:9300144..9300168 (25 bp)
AAGGTGGTCGATCTCCATCGTTGGC
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--575--6011Chr01:9299212..9299236 (25 bp)
GAGAGAGAGCTCTGTATTCCAGAAA
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--1085--1411Chr01:9299192..9299216 (25 bp)
AGAAAACCTATTCCGTAGGCTCAAG
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--1148--10091Chr01:9299177..9299201 (25 bp)
TAGGCTCAAGCATCTCATCGTGGAC
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--263--451Chr01:9299166..9299190 (25 bp)
ATCTCATCGTGGACAACTTACCCAA
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--325--10471Chr01:9299149..9299173 (25 bp)
TTACCCAACCTTGATGAGCTCAGCT
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--48--5871Chr01:9299074..9299098 (25 bp)
GAGCCTGCAGATGGCATCGTTGGCA
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--881--6611Chr01:9299056..9299080 (25 bp)
GTTGGCATCGATAAACTCCTAAGGT
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--403--992Chr01:9314699..9314721 (23 bp)
AGGAGGTTGAGTTCTTTGGCCATAC
LOC_Os01g16400
OsAffx.11078.1.S1_s_at--533--331Chr01:9299007..9299031 (25 bp)
ATACTACTGTCGACTCCGTGGTGGA
LOC_Os01g16380
OsAffx.11078.1.S1_s_at--927--5111Chr01:9298960..9298984 (25 bp)
GCACATCCAAATCGGCCAAGAGTTT
LOC_Os01g16380
Target Sequence 
AAGGTGGTCGATCTCCATCGTTGGCTTCGGCGGCCTGGGCAAGACGACGCTGGCGGCGACGGGGATCCAGCACCGGGCGT
TCGTGACGGTGTCCCGGAACTGCGACCTCCGCGCGCTGCTGGAGTCGTTGCTGAAGCAGCTCGTCGAGACGCCATTGATG
AGAGATCCGCGCAAATGTTGCGGCCAGGAAACGGCCGCCGGCGACGGCGACCATGACCCGCTCAGAGGAATCGAGACCCT
GGGACCTATACCATCAGTCATACATGGGGAGAGAGAGCTCTGTATTCCAGAAAACCTATTCCGTAGGCTCAAGCATCTCA
TCGTGGACAACTTACCCAACCTTGATGAGCTCAGCTTCCAGGGAGGCGCTCCTGAGCTTGGGAGGCTCACGCTGCCCTTC
CTCAAGGAGCCTGCAGATGGCATCGTTGGCATCGATAAACTCCTAAGGTTGAAGGAGGTTGAGTTCTTTGGCCATACTAC
TGTCGACTCCGTGGTGGAGGGGATGGTAGACGTGTATAAGGCACATCCAAATCGGCCAAGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11078.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis