Browse Element(s) Details


Os.49478.1.S1_at

Description gb:AK062469.1
DB_XREF= gi:32972487
TID=Os.49478.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E06, full insert sequence.
FL= gb:AK062469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1200011/11expressed protein
LOC_Os04g375201/11expressed protein
LOC_Os10g417101/11chloroplast chaperonin 10, putative, expressed
LOC_Os08g343701/11SET domain containing protein
LOC_Os03g550801/11WRKY DNA binding domain containing protein, expressed
LOC_Os06g063001/11TWIN SISTER of FT protein, putative, expressed
LOC_Os03g586401/11FHA domain containing protein, expressed
LOC_Os07g392901/11RuvB-like 2, putative, expressed
LOC_Os01g164001/11NB-ARC domain containing protein, expressed
LOC_Os05g369601/11Protein kinase domain containing protein, expressed
LOC_Os10g036501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11970NANA12+6549848..6553711retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g11980NANA12+6562776..6562982hypothetical protein
LOC_Os12g11990Os.22621.1.S1_at11/1112+6566094..6566550expressed protein
LOC_Os12g12000Os.49478.1.S1_at11/1112+6575262..6575919expressed protein
LOC_Os12g12010OsAffx.31705.2.S1_at10/1112+6582236..6585235Leucine Rich Repeat family protein
LOC_Os12g12020NANA12+6588993..6589523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12030Os.54151.1.S1_x_at2/1112+6590751..6592904retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.38764.1.S1_x_at8/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.45173.1.S1_x_at2/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12040Os.10731.1.A1_a_at1/1112+6595058..6597584retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006457biological_processprotein folding
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009744biological_processresponse to sucrose stimulus
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0009969biological_processxyloglucan biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009570cellular_componentchloroplast stroma
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0003678molecular_functionDNA helicase activity
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008417molecular_functionfucosyltransferase activity
GO:0008429molecular_functionphosphatidylethanolamine binding
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0051087molecular_functionchaperone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49478.1.S1_at--756--331Chr12:6575330..6575354 (25 bp)
ATAACTAATCATCCGTCGATCGACG
LOC_Os12g12000
Os.49478.1.S1_at--725--3731Chr12:6575334..6575358 (25 bp)
CTAATCATCCGTCGATCGACGCCGG
LOC_Os12g12000
Os.49478.1.S1_at--162--251Chr12:6575765..6575789 (25 bp)
ATATACGTAGGTACTCGATCGCTCT
LOC_Os12g12000
Os.49478.1.S1_at--824--4811Chr12:6575785..6575809 (25 bp)
GCTCTCCCTCTCCTAAATAATCTAT
LOC_Os12g12000
Os.49478.1.S1_at--956--9231Chr12:6575795..6575819 (25 bp)
TCCTAAATAATCTATCCCTCCGTTA
LOC_Os12g12000
Os.49478.1.S1_at--1142--3671Chr12:6575797..6575821 (25 bp)
CTAAATAATCTATCCCTCCGTTAAG
LOC_Os12g12000
Os.49478.1.S1_at--581--10471Chr12:6575817..6575841 (25 bp)
TTAAGTTGTCCTTCCGTAACTCATT
LOC_Os12g12000
Os.49478.1.S1_at--521--6631Chr12:6575821..6575845 (25 bp)
GTTGTCCTTCCGTAACTCATTGTTA
LOC_Os12g12000
Os.49478.1.S1_at--944--3631Chr12:6575827..6575851 (25 bp)
CTTCCGTAACTCATTGTTAATGGCA
LOC_Os12g12000
Os.49478.1.S1_at--230--2971Chr12:6575845..6575869 (25 bp)
AATGGCAATATTACGTACTCCCTCC
LOC_Os12g12000
Os.49478.1.S1_at--1013--665127Chr12:6575890..6575914 (25 bp)
GTTGACTTTTTAAGACCATTCGTCT
LOC_Os12g12000
Target Sequence 
ATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGAGATGGCGAGAAGAGCGACCGCGCGCGGGG
CTGGGCTGCCGGCGCCGTTCGTCGTCGTCGTCTCTGTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCG
GCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCGCGCGGCCCCACTTGGCGGGGCTGCTG
CAACCAGTATAAAGAGCGAGGGGAGCCAGGGGGTAGCTACACANGGAGAGGGAGGTTTGGACCNTGCNTTCCTACGCAGC
CATGCCACAAACCAATACCATAGATGCCAGGCNCCANNGGTGATCANNATATATAGNGGGCGTACGTGACACTGATCGAT
NCGCACACNGTACTATACGTATNTNATNCNGTTATATATATACGTAGGTACTCGATCGCTCTCCCTCTCCTAAATAATCT
ATCCCTCCGTTAAGTTGTCCTTCCGTAACTCATTGTTAATGGCAATATTACGTACTCCCTCCGTATTTTAATGTATGACG
CCGTTGACTTTTTAAGACCATTCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis