Browse Element(s) Details


Os.22621.1.S1_at

Description gb:AK063190.1
DB_XREF= gi:32973208
TID=Os.22621.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-B09, full insert sequence.
FL= gb:AK063190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1199011/11expressed protein
LOC_Os12g116201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11970NANA12+6549848..6553711retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g11980NANA12+6562776..6562982hypothetical protein
LOC_Os12g11990Os.22621.1.S1_at11/1112+6566094..6566550expressed protein
LOC_Os12g12000Os.49478.1.S1_at11/1112+6575262..6575919expressed protein
LOC_Os12g12010OsAffx.31705.2.S1_at10/1112+6582236..6585235Leucine Rich Repeat family protein
LOC_Os12g12020NANA12+6588993..6589523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12030Os.54151.1.S1_x_at2/1112+6590751..6592904retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22621.1.S1_at--446--4231Chr12:6566343..6566367 (25 bp)
CCGACATGCAATCCAGACCAATATT
LOC_Os12g11990
Os.22621.1.S1_at--818--5651Chr12:6566341..6566365 (25 bp)
GACATGCAATCCAGACCAATATTCA
LOC_Os12g11990
Os.22621.1.S1_at--4--671Chr12:6566338..6566362 (25 bp)
ATGCAATCCAGACCAATATTCATGC
LOC_Os12g11990
Os.22621.1.S1_at--920--10212Chr12:6566322..6566346 (25 bp)
TATTCATGCCCACCGCCTACTACTG
LOC_Os12g11990
Os.22621.1.S1_at--317--10331Chr12:6566255..6566279 (25 bp)
TTTAATAAACCAACAGCATATAATG
LOC_Os12g11990
Os.22621.1.S1_at--487--2992Chr12:6566234..6566258 (25 bp)
AATGAAATAGTTATCGTTCCTACAG
LOC_Os12g11990
Os.22621.1.S1_at--917--5592Chr12:6566231..6566255 (25 bp)
GAAATAGTTATCGTTCCTACAGAAG
LOC_Os12g11990
Os.22621.1.S1_at--191--6791Chr12:6566225..6566249 (25 bp)
GTTATCGTTCCTACAGAAGTTTCTT
LOC_Os12g11990
Os.22621.1.S1_at--831--10151Chr12:6566223..6566247 (25 bp)
TATCGTTCCTACAGAAGTTTCTTCT
LOC_Os12g11990
Os.22621.1.S1_at--412--6691Chr12:6566219..6566243 (25 bp)
GTTCCTACAGAAGTTTCTTCTCTAC
LOC_Os12g11990
Os.22621.1.S1_at--266--10572Chr12:6566205..6566229 (25 bp)
TTCTTCTCTACAACTTAAGATATAT
LOC_Os12g11990
Target Sequence 
CCGACATGCAATCCAGACCAATATTCATGCCCACCGCCTACTACTGTGCCATGATTATAAGCTGTATGCCGTTGGTTATT
AGTTTACTTTTAATAAACCAACAGCATATAATGAAATAGTTATCGTTCCTACAGAAGTTTCTTCTCTACAACTTAAGATA
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis