Browse Element(s) Details


Os.43707.1.S1_at

Description gb:NM_188044.1
DB_XREF= gi:34903171
TID=Os.43707.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1640011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16380OsAffx.11078.1.S1_s_at11/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.11078.1.S1_at9/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.23273.1.S1_x_at1/111+9298916..9300895hypothetical protein
LOC_Os01g16390OsAffx.23273.1.S1_x_at2/111+9302886..9306623NB-ARC domain containing protein
LOC_Os01g16400Os.43707.1.S1_at11/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.23273.1.S1_x_at2/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400Os.49478.1.S1_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.11078.1.S1_s_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16414Os.37639.1.S1_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.1.S1_a_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.2.S1_x_at10/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16430Os.6850.1.S1_at11/111+9322447..9326109Cystatin, putative, expressed
LOC_Os01g16440NANA1+9331527..9332044hypothetical protein
LOC_Os01g16450Os.11558.1.S1_at11/111+9336593..9339018Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43707.1.S1_at--773--3331Chr01:9314275..9314299 (25 bp)
CACTGGTTAAATGAGGACGCTGGCC
LOC_Os01g16400
Os.43707.1.S1_at--494--8451Chr01:9314295..9314319 (25 bp)
TGGCCTCGAGGAACTCCTAGATCTA
LOC_Os01g16400
Os.43707.1.S1_at--252--8171Chr01:9314304..9314328 (25 bp)
GGAACTCCTAGATCTAGACTCGCCA
LOC_Os01g16400
Os.43707.1.S1_at--562--5171Chr01:9314360..9314384 (25 bp)
GCAAGCTTAGCATGTTGCCTCCTTG
LOC_Os01g16400
Os.43707.1.S1_at--1113--9331Chr01:9314416..9314440 (25 bp)
TCGCTCCGAGAGAACTTCCTTGATG
LOC_Os01g16400
Os.43707.1.S1_at--108--3751Chr01:9314488..9314512 (25 bp)
CTCAAGCTCTACTACCAGTCATATA
LOC_Os01g16400
Os.43707.1.S1_at--465--5391Chr01:9314538..9314562 (25 bp)
GAAGCTATTCCCGAGGCTCAAGCAG
LOC_Os01g16400
Os.43707.1.S1_at--789--4831Chr01:9314553..9314577 (25 bp)
GCTCAAGCAGCTGATCGTGGACAAT
LOC_Os01g16400
Os.43707.1.S1_at--410--8151Chr01:9314571..9314595 (25 bp)
GGACAATATGCCCAACCTTGATGAG
LOC_Os01g16400
Os.43707.1.S1_at--428--3431Chr01:9314660..9314684 (25 bp)
CAGATGGCATCTCCGGCATTGACAA
LOC_Os01g16400
Os.43707.1.S1_at--348--1451Chr01:9314765..9314789 (25 bp)
AGAAGCATCCTAACAAGCCGAGAGT
LOC_Os01g16400
Target Sequence 
CACTGGTTAAATGAGGACGCTGGCCTCGAGGAACTCCTAGATCTAGACTCGCCACCCATCTTCCTCGAGAAGTTCTTCCT
CTGGGGCAAGCTTAGCATGTTGCCTCCTTGGNTCTCACACCTCGGCAATCTGGTCGACCTCTCGCTCCGAGAGAACTTCC
TTGATGGCAAGGAGGTCATCGAGCAGCTAGGCAAGCTCCCTAGCCTCCTCTCCCTCAAGCTCTACTACCAGTCATATATG
GGGAGAGAGCTCCACTTCCGGGAGAAGCTATTCCCGAGGCTCAAGCAGCTGATCGTGGACAATATGCCCAACCTTGATGA
GCTTAGCTTCCAAGGAGGCGCCCCCGAGCTTGAGAGGCTCACGCTCGCCGTCCTCAAGGAGCCTGCAGATGGCATCTCCG
GCATTGACAAGCTCCCAAGGCTCAAGGAGNGTTGAGTTCTTTGGCCATGTCATCGTCGACTCCGTGGTGGAGAGCATGGT
AGCTGTGTGCAAGAAGCATCCTAACAAGCCGAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis