Browse Element(s) Details


Os.6850.1.S1_at

Description gb:AK104155.1
DB_XREF= gi:32989364
TID=Os.6850.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B08, full insert sequence.
FL= gb:AK073275.1 gb:AK104155.1 gb:AK119511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1643011/11Cystatin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16380OsAffx.11078.1.S1_s_at11/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.11078.1.S1_at9/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.23273.1.S1_x_at1/111+9298916..9300895hypothetical protein
LOC_Os01g16390OsAffx.23273.1.S1_x_at2/111+9302886..9306623NB-ARC domain containing protein
LOC_Os01g16400Os.43707.1.S1_at11/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.23273.1.S1_x_at2/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400Os.49478.1.S1_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.11078.1.S1_s_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16414Os.37639.1.S1_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.1.S1_a_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.2.S1_x_at10/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16430Os.6850.1.S1_at11/111+9322447..9326109Cystatin, putative, expressed
LOC_Os01g16440NANA1+9331527..9332044hypothetical protein
LOC_Os01g16450Os.11558.1.S1_at11/111+9336593..9339018Peroxidase family protein, expressed
LOC_Os01g16460OsAffx.18485.4.S1_at9/111+9341659..9344181hypothetical protein
LOC_Os01g16470Os.43704.1.S1_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16470Os.43704.1.S1_x_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16480OsAffx.31069.1.S1_at2/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480OsAffx.31069.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004869molecular_functioncysteine protease inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6850.1.S1_at--810--8611Chr01:9323335..9323359 (25 bp)
TGGGTGGCGTGATGTTCCAGTACAT
LOC_Os01g16430
Os.6850.1.S1_at--193--2551Chr01:9323253..9323277 (25 bp)
AACTCCCTGTTTCCATATGAACTTC
LOC_Os01g16430
Os.6850.1.S1_at--13--5491Chr01:9323235..9323259 (25 bp)
GAACTTCTCGAGATCGTTCGTGCAA
LOC_Os01g16430
Os.6850.1.S1_at--256--671Chr01:9322716..9322740 (25 bp)
ATGAATCGAGCAGCCAGTGAACCTT
LOC_Os01g16430
Os.6850.1.S1_at--356--7351Chr01:9322700..9322724 (25 bp)
GTGAACCTTGCCACATTAAGCTGTA
LOC_Os01g16430
Os.6850.1.S1_at--143--2411Chr01:9322651..9322675 (25 bp)
AAAACAGTGAACATGCACCCTTCCG
LOC_Os01g16430
Os.6850.1.S1_at--209--2011Chr01:9322573..9322597 (25 bp)
ACTACACTATCCTTTTGTTCCTGTT
LOC_Os01g16430
Os.6850.1.S1_at--369--8811Chr01:9322558..9322582 (25 bp)
TGTTCCTGTTGCTCTTAGTGTGATA
LOC_Os01g16430
Os.6850.1.S1_at--107--1951Chr01:9322526..9322550 (25 bp)
ACTGGTCGTGTAACTTCTCAAGGGA
LOC_Os01g16430
Os.6850.1.S1_at--654--8171Chr01:9322504..9322528 (25 bp)
GGAACCGTGGGTCTATGCCATACAG
LOC_Os01g16430
Os.6850.1.S1_at--514--6651Chr01:9322458..9322482 (25 bp)
GTTGATACTTCTCAAGTCACCACTC
LOC_Os01g16430
Target Sequence 
TGGGTGGCGTGATGTTCCAGTACATGATCCTGTAGTCAAAGATGCTGCAGACCATGCTGTGAAATCAATCCAGCAGAGGT
CAAACTCCCTGTTTCCATATGAACTTCTCGAGATCGTTCGTGCAAAGGCAGAGGTTGTTGAAGACTTCGCAAAGTTTGAC
ATTCTGATGAAACTTAAGAGGGGAAACAAGGAGGAGAAGTTCAAAGCCGAGGTCCACAAGAACCTTGAAGGGGCATTTGT
ACTGAACCAGATGCAACAAGAGCATGATGAATCGAGCAGCCAGTGAACCTTGCCACATTAAGCTGTAGTTATGTAGTTTG
TGTTCAATAAGAAAACAGTGAACATGCACCCTTCCGTTTCTATCGGGACATAGGCTGGAACTTGTTCCTAACATCGATGA
AAAGAAGACACTACACTATCCTTTTGTTCCTGTTGCTCTTAGTGTGATAATACGATACTGGTCGTGTAACTTCTCAAGGG
AACCGTGGGTCTATGCCATACAGCTTGTGAATGTGAAATCCTATGTTGATACTTCTCAAGTCACCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis