Browse Element(s) Details


Os.43704.1.S1_at

Description gb:NM_188051.1
DB_XREF= gi:34903185
TID=Os.43704.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1647011/11Phosphatidylinositol 3- and 4-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16430Os.6850.1.S1_at11/111+9322447..9326109Cystatin, putative, expressed
LOC_Os01g16440NANA1+9331527..9332044hypothetical protein
LOC_Os01g16450Os.11558.1.S1_at11/111+9336593..9339018Peroxidase family protein, expressed
LOC_Os01g16460OsAffx.18485.4.S1_at9/111+9341659..9344181hypothetical protein
LOC_Os01g16470Os.43704.1.S1_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16470Os.43704.1.S1_x_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16480OsAffx.31069.1.S1_at2/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480OsAffx.31069.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16490NANA1+9358131..9359378retrotransposon protein, putative, unclassified
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43704.1.S1_at--723--4231Chr01:9346959..9346983 (25 bp)
CCGAGCTGGAGTACGTCGCGTCGCT
LOC_Os01g16470
Os.43704.1.S1_at--134--1631Chr01:9346962..9346986 (25 bp)
AGCTGGAGTACGTCGCGTCGCTCGA
LOC_Os01g16470
Os.43704.1.S1_at--752--9451Chr01:9347115..9347139 (25 bp)
TCGGCGACATGATGACACGCGAGTT
LOC_Os01g16470
Os.43704.1.S1_at--1000--8371Chr01:9347117..9347141 (25 bp)
GGCGACATGATGACACGCGAGTTCT
LOC_Os01g16470
Os.43704.1.S1_at--1129--5651Chr01:9347120..9347144 (25 bp)
GACATGATGACACGCGAGTTCTCGG
LOC_Os01g16470
Os.43704.1.S1_at--808--711Chr01:9347123..9347147 (25 bp)
ATGATGACACGCGAGTTCTCGGCGA
LOC_Os01g16470
Os.43704.1.S1_at--300--8871Chr01:9347124..9347148 (25 bp)
TGATGACACGCGAGTTCTCGGCGAT
LOC_Os01g16470
Os.43704.1.S1_at--965--671Chr01:9347126..9347150 (25 bp)
ATGACACGCGAGTTCTCGGCGATGG
LOC_Os01g16470
Os.43704.1.S1_at--931--8951Chr01:9347127..9347151 (25 bp)
TGACACGCGAGTTCTCGGCGATGGA
LOC_Os01g16470
Os.43704.1.S1_at--426--4131Chr01:9347394..9347418 (25 bp)
CGCGGAAGCGCATGTCGTTCAAGGC
LOC_Os01g16470
Os.43704.1.S1_at--696--3911Chr01:9347439..9347463 (25 bp)
CGGCGTTCCTTGACCGGTTCGAGCA
LOC_Os01g16470
Target Sequence 
CCGAGCTGGAGTACGTCGCGTCGCTCGACCNGTTCCGGGACGCCGCGATGNTCCGCGCCGAGCTGCCGTCGCTGACGGAG
GCGGCCATCCGGATCCTCACCCTCTGCACCATCTTCCTGCAGCGCGCGGCCGCCGCGGGGCTCTGCCTCGCCGACATCGG
CGACATGATGACACGCGAGTTCTCGGCGATGGAGGAGGGGCTCAGCGCGCTCGAGTCCCTCTGCAAGAACGCCTACGATT
CCTCCACCACCACCGCCGGCTCATCCCCTCGGAAGCACCACCACTCCGACGACTCCGACGACGAGAGCACCCAGTTCGGC
ATGGACGACGTGCCCGCCGGGCTCCCTCCTCACCTCTTCCTCCTCGGCGGCGGCGGCATCGCCAAGAGCGTGAGCTTCTC
CGCGGCGGAGCAGGGCGCCGCCGGGCGCGGCGCCGCGCGGAAGCGCATGTCGTTCAAGGCGCTGAGCGGCGACGAGTGGG
CGGCGTTCCTTGACCGGTTCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis