Browse Element(s) Details


Os.37842.1.S1_at

Description gb:AK073797.1
DB_XREF= gi:32983820
TID=Os.37842.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067G11, full insert sequence.
FL= gb:AK073797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1652011/11glutamyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16470Os.43704.1.S1_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16470Os.43704.1.S1_x_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16480OsAffx.31069.1.S1_at2/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480OsAffx.31069.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16490NANA1+9358131..9359378retrotransposon protein, putative, unclassified
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed
LOC_Os01g16530OsAffx.23276.1.S1_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.5307.1.S1_s_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.36108.2.S1_x_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0004818molecular_functionglutamate-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37842.1.S1_at--603--8511Chr01:9371736..9371760 (25 bp)
TGGAATTATAACTGAACTGCTTGGG
LOC_Os01g16520
Os.37842.1.S1_at--741--6751Chr01:9371676..9371700 (25 bp)
GTTAAAGCTAACGTGGCTGCCAGAT
LOC_Os01g16520
Os.37842.1.S1_at--336--6511Chr01:9371654..9371678 (25 bp)
GATATTGAAGATCTTGTATCTCTCT
LOC_Os01g16520
Os.37842.1.S1_at--394--6931Chr01:9371624..9371648 (25 bp)
GTAGAGTTTGACTACCTAATCAAAA
LOC_Os01g16520
Os.37842.1.S1_at--1087--5591Chr01:9370851..9370875 (25 bp)
GACAATCTTAATCCATGCACTTGCC
LOC_Os01g16520
Os.37842.1.S1_at--678--651Chr01:9370837..9370861 (25 bp)
ATGCACTTGCCAAGAGTTTCCGGCT
LOC_Os01g16520
Os.37842.1.S1_at--390--6251Chr01:9370646..9370670 (25 bp)
GATGGTTTCTGGAACAGCAAATACA
LOC_Os01g16520
Os.37842.1.S1_at--590--5131Chr01:9370630..9370654 (25 bp)
GCAAATACAAGAATCATGTTCCTGA
LOC_Os01g16520
Os.37842.1.S1_at--261--731Chr01:9370615..9370639 (25 bp)
ATGTTCCTGATAAAACTGGTGTTGT
LOC_Os01g16520
Os.37842.1.S1_at--414--171Chr01:9370558..9370582 (25 bp)
ATTTTGTTGCTCCTTTTATTCTGAC
LOC_Os01g16520
Os.37842.1.S1_at--156--9111Chr01:9370551..9370575 (25 bp)
TGCTCCTTTTATTCTGACTATATGA
LOC_Os01g16520
Target Sequence 
TGGAATTATAACTGAACTGCTTGGGGAACTCCATCTTGAGGGGTCAGTTAAGATNGACAAAGTTAAAGCTAACGTGGCTG
CCAGATATTGAAGATCTTGTATCTCTCTNGTTGGTAGAGTTTGACTACCTAATCAAAAAGAANAAAGCTGGAAGAAGATG
ATAATNTCCTNTGACAATCTTAATCCATGCACTTGCCAAGAGTTTCCGGCTCTTGGNAGACGCAAACATGCGGAATCTNC
AAACAAGGAGAAATNCATACAGCTTGAAAGGAAAGGGTATTACAGGTGTGATGCTNCCATTTNATNCCGGTCTTNCCAAA
CCAATTGTCCTTTTCGCTATTNCCAGATGGNACGACAAAANGNCCGCAACGAANTAGGAACCTATAAGATGGTTTCTGGA
ACAGCAAATACAAGAATCATGTTCCTGATAAAACTGGTGTTGTAAACTTGTTGATTGGAATTTTAAACTTAAATAATTTT
GTTGCTCCTTTTATTCTGACTATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis