Browse Element(s) Details


Os.37994.2.S1_x_at

Description gb:CB965454
DB_XREF= gi:30227562
DB_XREF=NL20_E07
CLONE=NL20_E07
TID=Os.37994.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.37994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g165509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed
LOC_Os01g16530OsAffx.23276.1.S1_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.5307.1.S1_s_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.36108.2.S1_x_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.37994.2.S1_x_at--517--6311Chr01:9393215..9393239 (25 bp)
GATGACGCAGAAGCAGAGCCAGTTC
LOC_Os01g16550
Os.37994.2.S1_x_at--247--1311Chr01:9393002..9393026 (25 bp)
AGAGGGCCGTGAAGCCGACCAAGTT
LOC_Os01g16550
Os.37994.2.S1_x_at--1030--6731Chr01:9392980..9393004 (25 bp)
GTTCACCAAGGACATGGACGCCGAT
LOC_Os01g16550
Os.37994.2.S1_x_at--1143--8091NONE
GGACGCCGATAAGGAACTCACAAAA
NONE
Os.37994.2.S1_x_at--548--1471Chr01:9391197..9391221 (25 bp)
AGAAGGCTGCAAGTCTTGCCAGCAA
LOC_Os01g16550
Os.37994.2.S1_x_at--157--891Chr01:9391169..9391193 (25 bp)
AGGCGGCGACCTCAGTATACTCAAG
LOC_Os01g16550
Os.37994.2.S1_x_at--603--291Chr01:9391153..9391177 (25 bp)
ATACTCAAGGCGGACGTTGATCCCT
LOC_Os01g16550
Os.37994.2.S1_x_at--117--4051Chr01:9391139..9391163 (25 bp)
CGTTGATCCCTCCAATTCAAACTAG
LOC_Os01g16550
Os.37994.2.S1_x_at--114--2031Chr01:9391119..9391143 (25 bp)
ACTAGGAATCTGTGGCTACCTCTGC
LOC_Os01g16550
Os.37994.2.S1_x_at--927--3771Chr01:9391100..9391124 (25 bp)
CTCTGCCTACGGCTATGTGCTATAG
LOC_Os01g16550
Os.37994.2.S1_x_at--1100--1911NONE
ACGGCTAAATGTTTACATGCTGCTA
NONE
Target Sequence
GATGACGCAGAAGCAGAGCCAGTTCAAGGGGCAGGGGAAGAAGAAGACCATCCCTCCCAACCGCCATGGCAAGGCGCCCC
ACGTCCGCAAAGGGAAGAGGGCCGTGAAGCCGACCAAGTTCACCAAGGACATGGACGCCGATAAGGAACTCACAAAATTC
ATCAACCAGTGCAACGAGAAGAAGGCTGCAAGTCTTGCCAGCAAAGAAGGCGGCGACCTCAGTATACTCAAGGCGGACGT
TGATCCCTCCAATTCAAACTAGGAATCTGTGGCTACCTCTGCCTACGGCTATGTGCTATAGAAGATGAGTGTGTGGAATG
GATATTATGTTACATTGCATACTTGCATTCTAGTATTTCCCTGCAGAAATGTAGTAATTCTGTATTTCTCTGAAGAAGTT
TATGCTTACGGCTAAATGTTTACATGCTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37994.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis