Browse Element(s) Details


Os.10190.1.S1_at

Description gb:AK101384.1
DB_XREF= gi:32986593
TID=Os.10190.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036F10, full insert sequence.
FL= gb:AK101384.1 gb:AK062561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1654011/11RUB-activating enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16490NANA1+9358131..9359378retrotransposon protein, putative, unclassified
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed
LOC_Os01g16530OsAffx.23276.1.S1_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.5307.1.S1_s_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.36108.2.S1_x_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016925biological_processprotein sumoylation
GO:0045116biological_processprotein neddylation
GO:0008642molecular_functionubiquitin-like activating enzyme activity
GO:0019781molecular_functionNEDD8 activating enzyme activity
GO:0019948molecular_functionSUMO activating enzyme activity
GO:0046982molecular_functionprotein heterodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10190.1.S1_at--536--2951Chr01:9386842..9386866 (25 bp)
AATGTCGAGGGCTAGCGTAACACAC
LOC_Os01g16540
Os.10190.1.S1_at--1059--8371Chr01:9386870..9386894 (25 bp)
GGCGATAACCTCTACATGCAGGCAC
LOC_Os01g16540
Os.10190.1.S1_at--195--651Chr01:9386885..9386909 (25 bp)
ATGCAGGCACCTGAAGTCCTAGAGC
LOC_Os01g16540
Os.10190.1.S1_at--893--1271Chr01:9386910..9386934 (25 bp)
AGATGACGCGACCAAACCTGGGTGT
LOC_Os01g16540
Os.10190.1.S1_at--361--7711Chr01:9386929..9386953 (25 bp)
GGGTGTCCCAATGTTTGAGCTACTC
LOC_Os01g16540
Os.10190.1.S1_at--205--9711Chr01:9386952..9386976 (25 bp)
TCAAAGGAGCTGCACGCACGACTGT
LOC_Os01g16540
Os.10190.1.S1_at--829--5091Chr01:9386967..9386991 (25 bp)
GCACGACTGTGCATGTAACTGGAAT
LOC_Os01g16540
Os.10190.1.S1_at--1045--9251Chr01:9387017..9387041 (25 bp)
TCCTCTCTGAGGAAGCTGCGTGTTA
LOC_Os01g16540
Os.10190.1.S1_at--1113--9131Chr01:9387033..9387057 (25 bp)
TGCGTGTTACTTTCAAGGGCGTCGA
LOC_Os01g16540
Os.10190.1.S1_at--549--2731Chr01:9387248..9387272 (25 bp)
AAGCAATTCACAAGTCCGGACGCGA
LOC_Os01g16540
Os.10190.1.S1_at--1063--7091Chr01:9387315..9387339 (25 bp)
GTCAGCATGATGTCAGCGTCACGCA
LOC_Os01g16540
Target Sequence 
AATGTCGAGGGCTAGCGTAACACACGAAGGCGATAACCTCTACATGCAGGCACCTGAAGTCCTAGAGCAGATGACGCGAC
CAAACCTGGGTGTCCCAATGTTTGAGCTACTCAAAGGAGCTGCACGCACGACTGTGCATGTAACTGGAATGGCAGAAAAC
AACGGGAAGAAAGTATCCTCTCTGAGGAAGCTGCGTGTTACTTTCAAGGGCGTCGAGGAATCTTCGAAAATGGATGAGAG
TTCTTGATACTAGTTTATAGCTATGGCTTTCAAGAACTGAGAATTAACCAATTGTACCGGGGGGACCGAAGTGCTTAGAG
ATAAAATGCACACCACATTCAAAACTGTTTATTTGTTTAAATGAAATTGGCTAAAAAAAGAGAAAATGACATGTATACAT
TCTCACAAGCAATTCACAAGTCCGGACGCGACTCCCAGTTGGGTGCCCGGGAGGGGGTCAAATCGGTGCTGACGTCAGCA
TGATGTCAGCGTCACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis