Browse Element(s) Details


Os.11558.1.S1_at

Description gb:AK101508.1
DB_XREF= gi:32986717
TID=Os.11558.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045A16, full insert sequence.
FL= gb:AK103467.1 gb:AK060365.1 gb:AK101508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1645011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16400Os.43707.1.S1_at11/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.23273.1.S1_x_at2/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400Os.49478.1.S1_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.11078.1.S1_s_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16414Os.37639.1.S1_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.1.S1_a_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.2.S1_x_at10/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16430Os.6850.1.S1_at11/111+9322447..9326109Cystatin, putative, expressed
LOC_Os01g16440NANA1+9331527..9332044hypothetical protein
LOC_Os01g16450Os.11558.1.S1_at11/111+9336593..9339018Peroxidase family protein, expressed
LOC_Os01g16460OsAffx.18485.4.S1_at9/111+9341659..9344181hypothetical protein
LOC_Os01g16470Os.43704.1.S1_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16470Os.43704.1.S1_x_at11/111+9346058..9347536Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g16480OsAffx.31069.1.S1_at2/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480OsAffx.31069.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16490NANA1+9358131..9359378retrotransposon protein, putative, unclassified
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11558.1.S1_at--642--4831Chr01:9338528..9338552 (25 bp)
GCTCAAGTTCGACAGCGGTTACTAC
LOC_Os01g16450
Os.11558.1.S1_at--538--5031Chr01:9338621..9338645 (25 bp)
GCAGATGGTGGCAGACCTCACCAAC
LOC_Os01g16450
Os.11558.1.S1_at--36--4531Chr01:9338661..9338685 (25 bp)
GCCGCGTTCTCCATGTCCATGAAGA
LOC_Os01g16450
Os.11558.1.S1_at--463--9091Chr01:9338704..9338728 (25 bp)
TGCTCACCGGCAGCAAAGGGAATAT
LOC_Os01g16450
Os.11558.1.S1_at--89--6831Chr01:9338829..9338853 (25 bp)
GTTTCATCGGCGCTGATCAAAATAT
LOC_Os01g16450
Os.11558.1.S1_at--949--3271Chr01:9338846..9338870 (25 bp)
CAAAATATATTGTGCGCCATGATGA
LOC_Os01g16450
Os.11558.1.S1_at--903--1031Chr01:9338878..9338902 (25 bp)
AGGTCCCAAGATCTGTATTAATTTG
LOC_Os01g16450
Os.11558.1.S1_at--630--3111Chr01:9338897..9338921 (25 bp)
AATTTGTTAAGTGCTCGATTCGATC
LOC_Os01g16450
Os.11558.1.S1_at--9--9391Chr01:9338911..9338935 (25 bp)
TCGATTCGATCGTTCAAGGTGTGAC
LOC_Os01g16450
Os.11558.1.S1_at--561--2891Chr01:9338926..9338950 (25 bp)
AAGGTGTGACATTTTGTTCATCTTG
LOC_Os01g16450
Os.11558.1.S1_at--1034--10611Chr01:9338954..9338978 (25 bp)
TTCGTCGCGCGATCTAATCGAAGAA
LOC_Os01g16450
Target Sequence 
GCTCAAGTTCGACAGCGGTTACTACNCCAACCTGCAGAAGAAGCAGGGCGCGCTGGCGTCCGACGCCGCGCTCACCCAGA
ACGCCGCCGCGGCGCAGATGGTGGCAGACCTCACCAACCCGATCAAGTTCTACGCCGCGTTCTCCATGTCCATGAAGAAG
ATGGGACGCATCGACGTGCTCACCGGCAGCAAAGGGAATATCAGGAAGCAGTGCCGCTCCGCCTCCTGAATCCTGANGAT
CACCATACAAACATATTTTCTTCTTGGTTTCTTGAATTTTTTTTTTNTTCTTCTTCTCCTCTCTCGTTTCATCGGCGCTG
ATCAAAATATATTGTGCGCCATGATGATTAATTAAGGTCCCAAGATCTGTATTAATTTGTTAAGTGCTCGATTCGATCGT
TCAAGGTGTGACATTTTGTTCATCTTGGCCTTCGTCGCGCGATCTAATCGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis