Browse Element(s) Details


OsAffx.11078.1.S1_at

Description gb:NM_188043.1
DB_XREF= gi:34903169
TID=OsAffx.11078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g163809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16360OsAffx.23273.1.S1_x_at11/111+9285642..9285884hypothetical protein
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16380OsAffx.11078.1.S1_s_at11/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.11078.1.S1_at9/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.23273.1.S1_x_at1/111+9298916..9300895hypothetical protein
LOC_Os01g16390OsAffx.23273.1.S1_x_at2/111+9302886..9306623NB-ARC domain containing protein
LOC_Os01g16400Os.43707.1.S1_at11/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.23273.1.S1_x_at2/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400Os.49478.1.S1_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.11078.1.S1_s_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16414Os.37639.1.S1_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.1.S1_a_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.2.S1_x_at10/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16430Os.6850.1.S1_at11/111+9322447..9326109Cystatin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11078.1.S1_at--544--10611Chr01:9300037..9300061 (25 bp)
TTCGTGACGGTGTCCCGGAACTGCG
LOC_Os01g16380
OsAffx.11078.1.S1_at--498--4571Chr01:9300004..9300028 (25 bp)
GCGCTGCTGGAGTCGTTGCTGAAGC
LOC_Os01g16380
OsAffx.11078.1.S1_at--306--4171Chr01:9299967..9299991 (25 bp)
CGCCATTGATGAGAGATCCGCGCAA
LOC_Os01g16380
OsAffx.11078.1.S1_at--538--10771Chr01:9299962..9299986 (25 bp)
TTGATGAGAGATCCGCGCAAATGTT
LOC_Os01g16380
OsAffx.11078.1.S1_at--389--1291Chr01:9299954..9299978 (25 bp)
AGATCCGCGCAAATGTTGCGGCCAG
LOC_Os01g16380
OsAffx.11078.1.S1_at--834--711Chr01:9299942..9299966 (25 bp)
ATGTTGCGGCCAGGAAACGGCCGCC
LOC_Os01g16380
OsAffx.11078.1.S1_at--57--1951Chr01:9299913..9299937 (25 bp)
ACGGCGACCATGACCCGCTCAGAGG
LOC_Os01g16380
OsAffx.11078.1.S1_at--178--691Chr01:9299904..9299928 (25 bp)
ATGACCCGCTCAGAGGAATCGAGAC
LOC_Os01g16380
OsAffx.11078.1.S1_at--117--4231Chr01:9299899..9299923 (25 bp)
CCGCTCAGAGGAATCGAGACCCTGG
LOC_Os01g16380
OsAffx.11078.1.S1_at--85--5991NONE
GAGACCCTGGGACCTATACCATCAG
NONE
OsAffx.11078.1.S1_at--108--1791NONE
ACCCTGGGACCTATACCATCAGTCA
NONE
Target Sequence 
TTCGTGACGGTGTCCCGGAACTGCGACCTCCGCGCGCTGCTGGAGTCGTTGCTGAAGCAGCTCGTCGAGACGCCATTGAT
GAGAGATCCGCGCAAATGTTGCGGCCAGGAAACGGCCGCCGGCGACGGCGACCATGACCCGCTCAGAGGAATCGAGACCC
TGGGACCTATACCATCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis