Browse Element(s) Details


Os.35373.2.S1_at

Description gb:NM_188070.1
DB_XREF= gi:34903223
TID=Os.35373.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1660010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35373.2.S1_at--938--5371NONE
GAAGAAGAATCCTGTCTGGCACTGA
NONE
Os.35373.2.S1_at--156--3031Chr01:9424939..9424962 (24 bp)
AATCCTGTCTGGCACTGACAATTAA
LOC_Os01g16600
Os.35373.2.S1_at--979--2231Chr01:9424955..9424979 (25 bp)
ACAATTAAATACAAGGCCCTGCAAA
LOC_Os01g16600
Os.35373.2.S1_at--152--2431Chr01:9424978..9425002 (25 bp)
AAAACTGTGTATGCCAAATGAATGT
LOC_Os01g16600
Os.35373.2.S1_at--106--4391Chr01:9424990..9425014 (25 bp)
GCCAAATGAATGTGTCCCAGGGTCT
LOC_Os01g16600
Os.35373.2.S1_at--429--7451Chr01:9425001..9425025 (25 bp)
GTGTCCCAGGGTCTACAGAAAATGT
LOC_Os01g16600
Os.35373.2.S1_at--1099--3711Chr01:9425027..9425051 (25 bp)
CTACTGGTGCAGCTTCCGAAATTCA
LOC_Os01g16600
Os.35373.2.S1_at--463--5051Chr01:9425035..9425059 (25 bp)
GCAGCTTCCGAAATTCACCTTTATT
LOC_Os01g16600
Os.35373.2.S1_at--287--10531Chr01:9425048..9425072 (25 bp)
TTCACCTTTATTAAACTGGGCGAAG
LOC_Os01g16600
Os.35373.2.S1_at--711--5271Chr01:9425091..9425115 (25 bp)
GAATGCAATATATGTTCCGCAGCAA
LOC_Os01g16600
Os.35373.2.S1_at--1080--5131Chr01:9425112..9425497 (25 bp)
GCAAAACTGCAAAATGTTACACTTG
LOC_Os01g16600
Target Sequence 
GAAGAAGAATCCTGTCTGGCACTGACAATTAAATACAAGGCCCTGCAAAAACTGTGTATGCCAAATGAATGTGTCCCAGG
GTCTACAGAAAATGTGCTACTGGTGCAGCTTCCGAAATTCACCTTTATTAAACTGGGCGAAGATGAGAAGTGTTCCAAAG
GAATGCAATATATGTTCCGCAGCAAAACTGCAAAATGTTACACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35373.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis