Browse Element(s) Details


Os.35373.1.S1_at

Description gb:AK067786.1
DB_XREF= gi:32977804
TID=Os.35373.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120F01, full insert sequence.
FL= gb:AK067786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1660011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35373.1.S1_at--177--6011Chr01:9423794..9423818 (25 bp)
GAGAGCATACCAAGACAGGCCACCG
LOC_Os01g16600
Os.35373.1.S1_at--1106--5111Chr01:9425521..9425545 (25 bp)
GCAAACCTTCCAGGGTGGGATGATG
LOC_Os01g16600
Os.35373.1.S1_at--748--6551Chr01:9425582..9425606 (25 bp)
GATTACTCATTCTGATAGCTGCCCC
LOC_Os01g16600
Os.35373.1.S1_at--888--5231Chr01:9425651..9425675 (25 bp)
GATAGTTTTCCCAGTATACTTACAG
LOC_Os01g16600
Os.35373.1.S1_at--89--71Chr01:9425776..9425800 (25 bp)
ATTGCACCTCTGACATCTCTATAGA
LOC_Os01g16600
Os.35373.1.S1_at--526--5931Chr01:9425807..9425831 (25 bp)
GAGCATATGTTGATCTGTTGTCCAA
LOC_Os01g16600
Os.35373.1.S1_at--61--491Chr01:9425819..9425843 (25 bp)
ATCTGTTGTCCAATTGTTTGTTCGA
LOC_Os01g16600
Os.35373.1.S1_at--891--6851Chr01:9425834..9425858 (25 bp)
GTTTGTTCGAACTATACCGCTGTGT
LOC_Os01g16600
Os.35373.1.S1_at--254--5471Chr01:9425866..9425890 (25 bp)
GAACTGTAGCTTATTGGCATGCAAA
LOC_Os01g16600
Os.35373.1.S1_at--582--5251Chr01:9425901..9425925 (25 bp)
GAATGCCAAAGTTAAATATCGCCTA
LOC_Os01g16600
Os.35373.1.S1_at--725--3191Chr01:9425944..9425967 (24 bp)
CAATGGTTTAGTCGTTCGTTTTGCG
LOC_Os01g16600
Target Sequence 
GAGAGCATACCAAGACAGGCCACCGCCACGAAATCTTACATTGCCCCCTCCAGGAGTACCAGAAAGTGTGGTTACACTTG
TAAAGATGGTAAACGAGGCTACCGCAAACCTTCCAGGGTGGGATGATGGAAGATAGACTATGACGACAAATGTTGCTGAT
TAGTGATTACTCATTCTGATAGCTGCCCCATTCCTCTCTATTCAGGGGCAATACACCATAAATGATAGAAATCGATAGTT
TTCCCAGTATACTTACAGAAAGAAAACAAGATAGCAGCCCAAAAGTTTTTTTGATGAAATTATATCGAAATGCTACTAGT
ATAAACACCTAAAGTATAGTTATGCCAGTAAAATGGTGATTGCACCTCTGACATCTCTATAGAGTTACTGAGCATATGTT
GATCTGTTGTCCAATTGTTTGTTCGAACTATACCGCTGTGTAAATAGTGAACTGTAGCTTATTGGCATGCAAACAATGTT
TGCGAATGCCAAAGTTAAATATCGCCTATATAATGTCAATAAAATACAATGGTTTAGTCGTTCGTTTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis