Browse Element(s) Details


OsAffx.22187.2.A1_at

Description tigr:9629.m01657
TID=OsAffx.22187.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1663010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22187.2.A1_at--212--7611Chr01:9435277..9435301 (25 bp)
GGGAAGTCAGTTTTGCTTCCTTTGG
LOC_Os01g16630
OsAffx.22187.2.A1_at--358--8691Chr01:9435338..9435362 (25 bp)
TGTGCCTATGATGGAGTGCTTCCTT
LOC_Os01g16630
OsAffx.22187.2.A1_at--862--8552Chr01:9435349..9435373 (25 bp)
TGGAGTGCTTCCTTTGGGTTCAAGA
LOC_Os01g16630
OsAffx.22187.2.A1_at--128--1332Chr01:9435415..9435439 (25 bp)
AGAGGGAAGTCGGTGTTTGCTTACT
LOC_Os01g16630
OsAffx.22187.2.A1_at--574--7611Chr01:9435418..9435442 (25 bp)
GGGAAGTCGGTGTTTGCTTACTTTG
LOC_Os01g16630
OsAffx.22187.2.A1_at--164--5191Chr01:9435452..9435476 (25 bp)
GCAATGGCAGCGAATGTGGACAAAT
LOC_Os01g16630
OsAffx.22187.2.A1_at--337--1632Chr01:9435460..9435481 (22 bp)
AGCGAATGTGGACAAATGCCCGGAA
LOC_Os01g16630
OsAffx.22187.2.A1_at--285--3031NONE
AATGCCCGGAAGTCGGTGTTTGCTT
NONE
OsAffx.22187.2.A1_at--776--3231Chr01:9435636..9435660 (25 bp)
CAAGAGCAACGGTAGCAGCAATGGT
LOC_Os01g16630
OsAffx.22187.2.A1_at--888--3251Chr01:9435926..9435950 (25 bp)
CAACGACAGCGGAGAGGTAGCAGTA
LOC_Os01g16630
OsAffx.22187.2.A1_at--344--6951Chr01:9435942..9436082 (25 bp)
GTAGCAGTAGAGTGGTACGCCAAGC
LOC_Os01g16630
Target Sequence 
GGGAAGTCAGTTTTGCTTCCTTTGGGTTAAAAGAGCAACGGCAGCGAATGTGCTTATGGAATGTGCCTATGATGGAGTGC
TTCCTTTGGGTTCAAGAGCAACGGCAGCGAATGTGCTTATGGAATGTGCCTATAATAGAGAGGGAAGTCGGTGTTTGCTT
ACTTTGGGTTCAAGAGCAATGGCAGCGAATGTGGACAAATGCCCGGAAGTCGGTGTTTGCTTCCAAAAACCTTTGGTTCA
AGAGCAACGGTAGCAGCAATGGTGTAAGGAAGGATGAGGCGGCGGCGGCGAAGAGGGAGCAGCAGAGAAGCAACGACAGC
GGAGAGGTAGCAGTAGAGTGGTACGCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22187.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis