Browse Element(s) Details


Os.54612.1.A1_at

Description gb:AK106247.1
DB_XREF= gi:32991456
TID=Os.54612.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D08, full insert sequence.
FL= gb:AK106247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0731011/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os02g07270OsAffx.22708.3.S1_x_at8/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07270OsAffx.22708.4.S1_x_at7/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07280NANA2+3736136..3737851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_x_at11/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_at10/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.2.S1_x_at6/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.1.S1_x_at2/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07300OsAffx.24147.1.S1_at11/112+3742581..3742987hypothetical protein
LOC_Os02g07310Os.54612.1.A1_at11/112+3748475..3755489Piwi domain containing protein, expressed
LOC_Os02g07320OsAffx.2535.1.S1_at11/112+3761051..3762806hypothetical protein
LOC_Os02g07330Os.54543.1.S1_at11/112+3772296..3776104expressed protein
LOC_Os02g07330Os.27381.1.S1_at1/112+3772296..3776104expressed protein
LOC_Os02g07340Os.27381.1.S1_at11/112+3778087..3791873HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54612.1.A1_at--698--6531Chr02:3749320..3749344 (25 bp)
GATTTCTACTTGTGTAGCCACCGCA
LOC_Os02g07310
Os.54612.1.A1_at--276--1631Chr02:3749189..3749213 (25 bp)
AGCGGCCCAGGTATTATCATGTTCT
LOC_Os02g07310
Os.54612.1.A1_at--1058--5771Chr02:3749160..3749184 (25 bp)
GACGAGAACGACTTCTTGGCTGGTT
LOC_Os02g07310
Os.54612.1.A1_at--744--3031Chr02:3748878..3749024 (25 bp)
AATCCATATCAGTTGTGGCCCCTGT
LOC_Os02g07310
Os.54612.1.A1_at--272--2371Chr02:3748810..3748834 (25 bp)
AAACCACGCTCGATTGGCGATTCAA
LOC_Os02g07310
Os.54612.1.A1_at--151--2811Chr02:3748758..3748782 (25 bp)
AAGATAGCAGCGCAGCCTCAGAGAC
LOC_Os02g07310
Os.54612.1.A1_at--849--1391Chr02:3748737..3748761 (25 bp)
AGACTGGCAGTCTTCTTCCTATAAA
LOC_Os02g07310
Os.54612.1.A1_at--960--7551Chr02:3748698..3748722 (25 bp)
GGGCCATGTTTTTCTGCTAGAACTG
LOC_Os02g07310
Os.54612.1.A1_at--965--1271Chr02:3748664..3748688 (25 bp)
AGATCTGCTGTCATTTTGTACGTGG
LOC_Os02g07310
Os.54612.1.A1_at--1066--7011Chr02:3748636..3748660 (25 bp)
GTACAGTCCCACAGTTCTTGGTAGA
LOC_Os02g07310
Os.54612.1.A1_at--967--2051Chr02:3748540..3748564 (25 bp)
ACATTGTTCCTGTACCGATACTTTA
LOC_Os02g07310
Target Sequence 
GATTTCTACTTGTGTAGCCACCGCAGCACGCAGGGAACTAAGCGGCCCAGGTATTATCATGTTCTGTGGGACGAGAACGA
CTTCTTGGCTGGTTCTTTCCAAGAGCTCACAAACTACCTCTGCTACACCTCCGCAACTTGCACCCAATCCATATCAGTTG
TGGCCCCTGTGCACTACGCTCGTCTTCTGTCATCACGAGCTCGATGTTACATTAAACCACGCTCGATTGGCGATTCAACG
AGCCACACCTCCTTGCCTTCTGAAGAAGATAGCAGCGCAGCCTCAGAGACTGGCAGTCTTCTTCCTATAAAGGATAATTT
GAAAGGGGCCATGTTTTTCTGCTAGAACTGCTGCCAGCAAGATCTGCTGTCATTTTGTACGTGGTCTGTACAGTCCCACA
GTTCTTGGTAGATTTGACTGAGCAGTCAAAACTCATTATCGTTCAGCGAGATTCAGGTGTAGCAGCTGTAGGATTACTGA
TAAACATTGTTCCTGTACCGATACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54612.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis