Browse Element(s) Details


Os.26566.1.S1_at

Description gb:AK070041.1
DB_XREF= gi:32980065
TID=Os.26566.1
CNT=191
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.26566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036N24, full insert sequence.
FL= gb:AK070041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0726011/11Phosphoglycerate kinase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os02g07270OsAffx.22708.3.S1_x_at8/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07270OsAffx.22708.4.S1_x_at7/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07280NANA2+3736136..3737851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_x_at11/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_at10/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.2.S1_x_at6/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.1.S1_x_at2/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07300OsAffx.24147.1.S1_at11/112+3742581..3742987hypothetical protein
LOC_Os02g07310Os.54612.1.A1_at11/112+3748475..3755489Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004618molecular_functionphosphoglycerate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26566.1.S1_at--1061--7691Chr02:3730562..3730586 (25 bp)
GGGTCTTGATGTTGGCCCAGATGCC
LOC_Os02g07260
Os.26566.1.S1_at--1023--6351Chr02:3730581..3730605 (25 bp)
GATGCCATCAAGACTTCCAGCGAAG
LOC_Os02g07260
Os.26566.1.S1_at--331--5391Chr02:3730602..3730626 (25 bp)
GAAGCATTGGACACCTGCAACACTA
LOC_Os02g07260
Os.26566.1.S1_at--56--5831Chr02:3730789..3730813 (25 bp)
GATCTTACTACCACAAAGGGCGCCA
LOC_Os02g07260
Os.26566.1.S1_at--1108--7411Chr02:3730940..3730964 (25 bp)
GTGTTCTTGCCCTTGATGAAGCGTA
LOC_Os02g07260
Os.26566.1.S1_at--73--2711Chr02:3730964..3730988 (25 bp)
AAGCTAATTCGGCTTGTCTCCATCA
LOC_Os02g07260
Os.26566.1.S1_at--881--391Chr02:3730985..3731009 (25 bp)
ATCAGCAGTCTGCACTTTTGTTTCA
LOC_Os02g07260
Os.26566.1.S1_at--710--10391Chr02:3731000..3731024 (25 bp)
TTTTGTTTCAGACCTCTCGGTGTAA
LOC_Os02g07260
Os.26566.1.S1_at--871--1751Chr02:3731011..3731035 (25 bp)
ACCTCTCGGTGTAACTTTGCAATGT
LOC_Os02g07260
Os.26566.1.S1_at--1039--911Chr02:3731062..3731086 (25 bp)
AGGCTTATCGTCAAGTTTTGCTAGA
LOC_Os02g07260
Os.26566.1.S1_at--808--3071Chr02:3731096..3731120 (25 bp)
AATAAGCTTTTCGACTTCCTCGCTG
LOC_Os02g07260
Target Sequence 
GGGTCTTGATGTTGGCCCAGATGCCATCAAGACTTCCAGCGAAGCATTGGACACCTGCAACACTATCATTTGGAACGGAC
CTATGGGAGTCTTTGAGTTTGAGAAGTTTGCAGCAGGCACTGATGCAATTGCCAAGAAGTTGGCTGATCTTACTACCACA
AAGGGCGCCACGACCATCATCGGTGGTGGTGACTCCGTTGCTGCGGTCGAGAAGGCTGGGCTGGCCGACAAGATGAGCCA
CATCTCCACCGGCGGTGGTGCTAGCTTGGAGTTGCTGGAAGGCAAGACCCTCCCAGGTGTTCTTGCCCTTGATGAAGCGT
AAGCTAATTCGGCTTGTCTCCATCAGCAGTCTGCACTTTTGTTTCAGACCTCTCGGTGTAACTTTGCAATGTCAATGCTT
GTATGAAGAACTTGAGATAGGCTTATCGTCAAGTTTTGCTAGATGAGTCGTGAATAAGCTTTTCGACTTCCTCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis