Browse Element(s) Details


Os.51202.1.S1_at

Description gb:AK061562.1
DB_XREF= gi:32971580
TID=Os.51202.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E02, full insert sequence.
FL= gb:AK061562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g072209/11immunophilin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os02g07270OsAffx.22708.3.S1_x_at8/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07270OsAffx.22708.4.S1_x_at7/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07280NANA2+3736136..3737851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_x_at11/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_at10/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.2.S1_x_at6/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.1.S1_x_at2/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51202.1.S1_at--561--8851Chr02:3712729..3712753 (25 bp)
TGATCCGATGCCGTTTGTATTCACC
LOC_Os02g07220
Os.51202.1.S1_at--10--131Chr02:3712712..3712735 (24 bp)
ATTCACCGTCGGAGCTGGAAATGTT
LOC_Os02g07220
Os.51202.1.S1_at--760--3491Chr02:3711963..3711987 (25 bp)
CATGAGAGTTGGTGGTCTTCGCCGT
LOC_Os02g07220
Os.51202.1.S1_at--757--3591NONE
CATTCCTCCTAATTTCTTTGATCGG
NONE
Os.51202.1.S1_at--1032--8231Chr02:3711526..3711550 (25 bp)
GGCAAATGGCGAGGGTTCCACTCTC
LOC_Os02g07220
Os.51202.1.S1_at--407--351Chr02:3711454..3711478 (25 bp)
ATAACTGTTCAGCACTGCCAAGGCT
LOC_Os02g07220
Os.51202.1.S1_at--799--8331NONE
GGCTGCAGATTGATCAACACCCTGA
NONE
Os.51202.1.S1_at--961--2691Chr02:3711394..3711418 (25 bp)
AAGCTCTGATCATCCTTCTGTTCAA
LOC_Os02g07220
Os.51202.1.S1_at--1090--271Chr02:3711345..3711369 (25 bp)
ATAGTGATGGTCTCCAATTCTCCAT
LOC_Os02g07220
Os.51202.1.S1_at--1091--91Chr02:3711329..3711353 (25 bp)
ATTCTCCATTCCTTGAGCAAACTCA
LOC_Os02g07220
Os.51202.1.S1_at--1104--7611Chr02:3711187..3711211 (25 bp)
GGGAGTAATTTTGCACCCTACAGTG
LOC_Os02g07220
Target Sequence 
TGATCCGATGCCGTTTGTATTCACCGTCGGAGCTGGAAATGTTATACCTGGTATTGAAGCAGCAGTGAAGTCCATGAGAG
TTGGTGGTCTTCGCCGTGTCATCATTCCACCGTCACAGGGATATCAGAACACATCACAAGAACCCATTCCTCCTAATTTC
TTTGATCGGCAGAGATTATTTACTACTATATTTAACCCAACACGTCTGGCAAATGGCGAGGGTTCCACTCTCGGTACACT
CATCTTCGACATCGAGCTAATCAGCATAAGGCAGCATTCATAACTGTTCAGCACTGCCAAGGCTGCAGATTGATCAACAC
CCTGATAGAAATCTCAAGGAAGCTCTGATCATCCTTCTGTTCAATCCCTTCTGTAATATGAAGAAAACATAGTGATGGTC
TCCAATTCTCCATTCCTTGAGCAAACTCAGGTGTATTATAACAGATTTTGTGGTACAGAAAGAAATTACAACCAGAAATC
AAGTTGTACACATGCTTTGATTGCAATTCAAATTTGATGTAAATTTGGCTTTTGATGGATCAAAGAGGGAGTAATTTTGC
ACCCTACAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis