Browse Element(s) Details


Os.54315.1.S1_at

Description gb:AK103301.1
DB_XREF= gi:32988510
TID=Os.54315.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125C15, full insert sequence.
FL= gb:AK103301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0718011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07120Os.17204.1.S1_at11/112+3659130..3669320HEAT repeat family protein, expressed
LOC_Os02g07130OsAffx.2532.1.S1_at10/112+3669874..3670702hypothetical protein
LOC_Os02g07140OsAffx.2533.1.S1_at11/112+3673312..3673617hypothetical protein
LOC_Os02g07150Os.54746.1.S1_at11/112+3674672..3677959Urease accessory protein F, putative, expressed
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54315.1.S1_at--1135--3091Chr02:3690533..3690557 (25 bp)
AATAGTGTTTTCACAGACCTGCCTA
LOC_Os02g07180
Os.54315.1.S1_at--123--2151Chr02:3690563..3690587 (25 bp)
ACAGCTTCTGGTCTGAACTGGGACA
LOC_Os02g07180
Os.54315.1.S1_at--796--2231Chr02:3690585..3690609 (25 bp)
ACAATGACAAGCCTACTCCTGTGTT
LOC_Os02g07180
Os.54315.1.S1_at--763--5991Chr02:3690951..3690975 (25 bp)
GAGACCAACTGAAGACCCTTGCAAG
LOC_Os02g07180
Os.54315.1.S1_at--764--2771Chr02:3690976..3691000 (25 bp)
AAGACCATCATCCTCGTAGCATTTG
LOC_Os02g07180
Os.54315.1.S1_at--223--9011Chr02:3691027..3691051 (25 bp)
TGAATTTTTTGAAAGGGCCCCAGCT
LOC_Os02g07180
Os.54315.1.S1_at--550--8411Chr02:3691042..3691066 (25 bp)
GGCCCCAGCTTTGGCTAATCTGATA
LOC_Os02g07180
Os.54315.1.S1_at--710--8531Chr02:3691067..3691091 (25 bp)
TGGACTCTAGCTACAAGCTGCGCAT
LOC_Os02g07180
Os.54315.1.S1_at--413--7751Chr02:3691121..3691145 (25 bp)
GGTGTCTGAGCTACATTCTCGTCAA
LOC_Os02g07180
Os.54315.1.S1_at--878--171Chr02:3691151..3691175 (25 bp)
ATTTCGGACCGTTATTGCCAAGTTG
LOC_Os02g07180
Os.54315.1.S1_at--302--8691Chr02:3691240..3691264 (25 bp)
TGTGAACATCAACTGCCGACTGGAG
LOC_Os02g07180
Target Sequence 
AATAGTGTTTTCACAGACCTGCCTATCTTTACAGCTTCTGGTCTGAACTGGGACAATGACAAGCCTACTCCTGTGTTGCC
AAAGGTGTGGGATGGTAACGGTATCCCAAACACAACTACCAAATACAAGGAGGACCAGAAAGTCAGTTGGCACGCAACGC
CTTTTGAGGAAAGGCTGATGAAAGTTCTGTCCGATGAGAAACCGCATCATCAAAGGAAAATCAGCGGAAAGCTGATCCAA
CTTGATGAAGAGACCAACTGAAGACCCTTGCAAGAAGACCATCATCCTCGTAGCATTTGCATCATCATCATCATCCTTGA
AACAGTGAATTTTTTGAAAGGGCCCCAGCTTTGGCTAATCTGATATGGACTCTAGCTACAAGCTGCGCATCTTGTCATCT
GTACAGCATTCGCAAATAGGGTGTCTGAGCTACATTCTCGTCAAATTTCATTTCGGACCGTTATTGCCAAGTTGTCAACT
TAAGTTGTCGTTTGCAACTTTTTGTTTTCCTCTGTAAAGAAGATGATACTTTATCTGCTGTGAACATCAACTGCCGACTG
GAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis