Browse Element(s) Details


Os.17204.1.S1_at

Description gb:AK069128.1
DB_XREF= gi:32979152
TID=Os.17204.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003N20, full insert sequence.
FL= gb:AK069128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0712011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07080NANA2+3640932..3644263transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07090NANA2+3645734..3647724transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07100Os.47463.1.S1_x_at6/112+3647845..3650789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07100Os.14491.2.S1_x_at5/112+3647845..3650789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07110NANA2+3655345..3655722Auxin responsive protein
LOC_Os02g07120Os.17204.1.S1_at11/112+3659130..3669320HEAT repeat family protein, expressed
LOC_Os02g07130OsAffx.2532.1.S1_at10/112+3669874..3670702hypothetical protein
LOC_Os02g07140OsAffx.2533.1.S1_at11/112+3673312..3673617hypothetical protein
LOC_Os02g07150Os.54746.1.S1_at11/112+3674672..3677959Urease accessory protein F, putative, expressed
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17204.1.S1_at--625--5511Chr02:3659600..3659624 (25 bp)
GAACAAGATAATGGCCTCACCTCCG
LOC_Os02g07120
Os.17204.1.S1_at--407--10051Chr02:3659510..3659534 (25 bp)
TAGTTGGAGCCGACTTGGTATATGT
LOC_Os02g07120
Os.17204.1.S1_at--1094--7271Chr02:3659487..3659511 (25 bp)
GTGCCACTGCCTATTCTGAGGTGAA
LOC_Os02g07120
Os.17204.1.S1_at--866--7351Chr02:3659467..3659491 (25 bp)
GTGAAGATTCAACCCAGCATTGCCC
LOC_Os02g07120
Os.17204.1.S1_at--133--10711Chr02:3659448..3659472 (25 bp)
TTGCCCTATATTTTTCTGGTGGAGC
LOC_Os02g07120
Os.17204.1.S1_at--747--5911Chr02:3659427..3659451 (25 bp)
GAGCTAGTCCGAAACACTGAACGAT
LOC_Os02g07120
Os.17204.1.S1_at--339--6931Chr02:3659316..3659340 (25 bp)
GTATGGCGGCAATTCACTAGATTCA
LOC_Os02g07120
Os.17204.1.S1_at--704--9991Chr02:3659272..3659296 (25 bp)
TAGCCGTCTTGTGCGTATTTTTTCA
LOC_Os02g07120
Os.17204.1.S1_at--1119--51Chr02:3659248..3659272 (25 bp)
ATTGCGTGGTACTAGTAATTCTTCC
LOC_Os02g07120
Os.17204.1.S1_at--1020--9331Chr02:3659233..3659257 (25 bp)
TAATTCTTCCAATCTCTAGACGCCG
LOC_Os02g07120
Os.17204.1.S1_at--20--10031Chr02:3659217..3659241 (25 bp)
TAGACGCCGTCCTTTTCCAAGTTTG
LOC_Os02g07120
Target Sequence 
GAACAAGATAATGGCCTCACCTCCGCTTGCTGNACAAGTACAACTNCGGTGCGCAGCGAGTAAGAGCTGATCTTTTTGTA
TATGGTAGAAAATAGTTGGAGCCGACTTGGTATATGTGCCACTGCCTATTCTGAGGTGAAGATTCAACCCAGCATTGCCC
TATATTTTTCTGGTGGAGCTAGTCCGAAACACTGAACGATACAGCTGAGACTAAGAGGTGGTTTGAAAATTTGCGAACAC
AAATGGCTGGTTGGAAGCTAGACTTTTTTTTTTTGTCTTGTACAAAGTATGGCGGCAATTCACTAGATTCAGTAAAGTTG
GATTATATTTTAGCCGTCTTGTGCGTATTTTTTCATTGCGTGGTACTAGTAATTCTTCCAATCTCTAGACGCCGTCCTTT
TCCAAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis