Browse Element(s) Details


Os.54746.1.S1_at

Description gb:AK106654.1
DB_XREF= gi:32991863
TID=Os.54746.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-G03, full insert sequence.
FL= gb:AK106654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0715011/11Urease accessory protein F, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07100Os.47463.1.S1_x_at6/112+3647845..3650789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07100Os.14491.2.S1_x_at5/112+3647845..3650789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07110NANA2+3655345..3655722Auxin responsive protein
LOC_Os02g07120Os.17204.1.S1_at11/112+3659130..3669320HEAT repeat family protein, expressed
LOC_Os02g07130OsAffx.2532.1.S1_at10/112+3669874..3670702hypothetical protein
LOC_Os02g07140OsAffx.2533.1.S1_at11/112+3673312..3673617hypothetical protein
LOC_Os02g07150Os.54746.1.S1_at11/112+3674672..3677959Urease accessory protein F, putative, expressed
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54746.1.S1_at--747--2931Chr02:3676496..3676520 (25 bp)
AAGGCTCGGCTCTTCTGAGAGTTGC
LOC_Os02g07150
Os.54746.1.S1_at--1037--1231Chr02:3676515..3676539 (25 bp)
AGTTGCTGCTTCTGTATTCACTGAG
LOC_Os02g07150
Os.54746.1.S1_at--904--2811Chr02:3676582..3676606 (25 bp)
AAGATTGTGTCGTTTCACCATGCAC
LOC_Os02g07150
Os.54746.1.S1_at--1099--1611Chr02:3676658..3676682 (25 bp)
AGCGTGCCTACATGTTCGTCACAAT
LOC_Os02g07150
Os.54746.1.S1_at--856--6191Chr02:3676707..3676731 (25 bp)
GAGGCTCAATTTGATCGGGCCGCTA
LOC_Os02g07150
Os.54746.1.S1_at--501--7911Chr02:3676849..3676873 (25 bp)
GGTTGCCATGCTTACATGTTCTCTA
LOC_Os02g07150
Os.54746.1.S1_at--963--10091Chr02:3676872..3676896 (25 bp)
TAGGCTGTTTTGCACCTGACAAGGA
LOC_Os02g07150
Os.54746.1.S1_at--967--351Chr02:3676934..3676958 (25 bp)
ATAATCCCCTCGATGTGTTTGCAGA
LOC_Os02g07150
Os.54746.1.S1_at--118--6071Chr02:3676957..3676981 (25 bp)
GAGTTGCCATGCTTACATGTTCCAT
LOC_Os02g07150
Os.54746.1.S1_at--542--731Chr02:3676973..3676997 (25 bp)
ATGTTCCATAGGCTGTTTCTGTACA
LOC_Os02g07150
Os.54746.1.S1_at--495--7931Chr02:3677010..3677034 (25 bp)
GGATTCACCTCAATAACCATGTCAA
LOC_Os02g07150
Target Sequence 
AAGGCTCGGCTCTTCTGAGAGTTGCTGCTTCTGTATTCACTGAGATTCAGTCGCTGCAGGATCTTCGACAAACATTCCTT
GGTTCCAAGATTGTGTCGTTTCACCATGCACCGATATTTGGGTTGATATGCGGGCTGGTTGGATTCGACAGCGAGACAAC
GCAGCGTGCCTACATGTTCGTCACAATGAGGGACGTGATCTCTGCTGCGACGAGGCTCAATTTGATCGGGCCGCTAGCTG
CTTCGGTTCTGCAGCACCAGGTTGCGGAAGATGCTGAAAGGATGGTGCAGAAGTGGAAGGATCGCGGTGTCGAAGAAGCA
ACGCAGACATCACCTCTGCTTGATGCGTTGCAGGGTTGCCATGCTTACATGTTCTCTAGGCTGTTTTGCACCTGACAAGG
AGGTGTGCTTCATCTCCCTGTTTCTTTCTTTTTTATACATAATCCCCTCGATGTGTTTGCAGAGTTGCCATGCTTACATG
TTCCATAGGCTGTTTCTGTACATTTGTTTTGAATGGATTCACCTCAATAACCATGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis