Browse Element(s) Details


Os.8426.1.S1_at

Description gb:AK067291.1
DB_XREF= gi:32977309
TID=Os.8426.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104L05, full insert sequence.
FL= gb:AK067291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0721011/11OTU-like cysteine protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os02g07270OsAffx.22708.3.S1_x_at8/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07270OsAffx.22708.4.S1_x_at7/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8426.1.S1_at--955--3331Chr02:3706113..3706137 (25 bp)
CACTGGCTGTTCTAAGTAGGTAGAT
LOC_Os02g07210
Os.8426.1.S1_at--380--311Chr02:3706090..3706114 (25 bp)
ATAGCCTATGGCAATTCTTGGAATT
LOC_Os02g07210
Os.8426.1.S1_at--741--3171Chr02:3706069..3706093 (25 bp)
AATTGTACCTGCCATTGTTCTTCTC
LOC_Os02g07210
Os.8426.1.S1_at--879--10791Chr02:3706055..3706079 (25 bp)
TTGTTCTTCTCACTCAATCTAGTAG
LOC_Os02g07210
Os.8426.1.S1_at--722--2011Chr02:3706044..3706068 (25 bp)
ACTCAATCTAGTAGCAGCTGTAACT
LOC_Os02g07210
Os.8426.1.S1_at--293--5071Chr02:3706031..3706055 (25 bp)
GCAGCTGTAACTTCATTTCACTTCG
LOC_Os02g07210
Os.8426.1.S1_at--492--191Chr02:3706017..3706041 (25 bp)
ATTTCACTTCGCTCATTTTCTGTCA
LOC_Os02g07210
Os.8426.1.S1_at--1015--7131Chr02:3705996..3706020 (25 bp)
GTCATTGCTGATGCTGTAAGTTGTA
LOC_Os02g07210
Os.8426.1.S1_at--56--7071Chr02:3705981..3706005 (25 bp)
GTAAGTTGTAACTCGGGAGCAAACT
LOC_Os02g07210
Os.8426.1.S1_at--939--9411Chr02:3705969..3705993 (25 bp)
TCGGGAGCAAACTTTGTAAGCTTAT
LOC_Os02g07210
Os.8426.1.S1_at--23--7031Chr02:3705944..3705968 (25 bp)
GTACAGTGAAATGCTGTTTGTTCAT
LOC_Os02g07210
Target Sequence 
CACTGGCTGTTCTAAGTAGGTAGATAGCCTATGGCAATTCTTGGAATTGTACCTGCCATTGTTCTTCTCACTCAATCTAG
TAGCAGCTGTAACTTCATTTCACTTCGCTCATTTTCTGTCATTGCTGATGCTGTAAGTTGTAACTCGGGAGCAAACTTTG
TAAGCTTATGTACAGTGAAATGCTGTTTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis