Browse Element(s) Details


OsAffx.11926.1.S1_s_at

Description tigr:9630.m00663
TID=OsAffx.11926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0721011/11OTU-like cysteine protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os02g07270OsAffx.22708.3.S1_x_at8/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07270OsAffx.22708.4.S1_x_at7/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11926.1.S1_s_at--26--8011Chr02:3708670..3708694 (25 bp)
GGATGTGACAGTTGGTACCCTTTTA
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--365--8451Chr02:3708658..3708682 (25 bp)
TGGTACCCTTTTAACTGAAGCAAAG
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--176--7531Chr02:3708629..3708653 (25 bp)
GTGGACGGAGTCTTGGAAAACGCCT
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--828--2591Chr02:3708611..3708635 (25 bp)
AACGCCTTTCCCACTTAGATTCTAT
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--696--2971Chr02:3708352..3708376 (25 bp)
AATGGGCAAATTCCTGATGTTAATA
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--330--6611Chr02:3708217..3708241 (25 bp)
GATTGGGCACTTATGGCTTAGCTGA
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--932--8251Chr02:3707814..3707838 (25 bp)
GGCAGATCAGATATTCCGCAATCCT
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--803--10211Chr02:3707803..3707827 (25 bp)
TATTCCGCAATCCTGACTATCACAA
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--674--8191Chr02:3707775..3707794 (20 bp)
GGAAGTCAGTCGTGAAGCAGCTAAA
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--19--791Chr02:3707428..3707452 (25 bp)
ATGTGACCTTACAAGCGGCTGCAGA
LOC_Os02g07210
OsAffx.11926.1.S1_s_at--724--4371Chr02:3706788..3706812 (25 bp)
GCCAAGATTTGCCTGCTGACATCAT
LOC_Os02g07210
Target Sequence 
GGATGTGACAGTTGGTACCCTTTTAACTGAAGCAAAGAACAGTGGACGGAGTCTTGGAAAACGCCTTTCCCACTTAGATT
CTATCCCGCACACTCCTCGAGTTAATGGGCAAATTCCTGATGTTAATAATGCAACAATAGACCATGAAACATTACTGGAA
AGATTGGGCACTTATGGCTTAGCTGAATTCCAAATTGAAGGAGACGGAAATTGTCAGTTCCGAGCTTTGGCAGATCAGAT
ATTCCGCAATCCTGACTATCACAAACATGTGAGGAAGTCAGTCGTGAAGCAGCTAAAGGAATTCAGGAAACACTATGAAG
GCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAGATCTGGAGAATGGGGAGATCATGTGACCTTACAA
GCGGCTGCAGACCGGTTTGCTGCCAAGATTTGCCTGCTGACATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11926.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis