Browse Element(s) Details


OsAffx.18294.1.S1_at

Description tigr:9638.m01572
TID=OsAffx.18294.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1880010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18760Os.8510.1.S1_at11/1110+9210026..9211586jasmonate-induced protein, putative, expressed
LOC_Os10g18770OsAffx.22708.2.S1_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.2.S1_x_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.5.S1_x_at6/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.1.S1_x_at4/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.4.S1_x_at11/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.3.S1_x_at7/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18790OsAffx.25936.2.S1_x_at11/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.1.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.7.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.5.S1_x_at2/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18800OsAffx.18294.1.S1_at10/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.23696.1.S1_x_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.988.1.S1_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18810NANA10+9243686..9244075hypothetical protein
LOC_Os10g18820Os.46700.1.S1_at11/1110+9251735..9252982Dirigent-like protein, expressed
LOC_Os10g18830OsAffx.266.1.S1_at11/1110+9253893..9257475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.265.1.S1_at11/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.8264.1.S1_at3/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18294.1.S1_at--140--4631Chr10:9236126..9236150 (25 bp)
GCGAGTGGGCCATTGTTGGTGGCAC
LOC_Os10g18800
OsAffx.18294.1.S1_at--643--7651Chr10:9236153..9236177 (25 bp)
GGGAGTTTAATATGGCATATGGCAC
LOC_Os10g18800
OsAffx.18294.1.S1_at--851--8831Chr10:9236192..9236216 (25 bp)
TGATCAAGCATAATGTTGGCACCGA
LOC_Os10g18800
OsAffx.18294.1.S1_at--189--3571Chr10:9236200..9236224 (25 bp)
CATAATGTTGGCACCGAGGCACTTA
LOC_Os10g18800
OsAffx.18294.1.S1_at--36--731Chr10:9236204..9236228 (25 bp)
ATGTTGGCACCGAGGCACTTAGAAA
LOC_Os10g18800
OsAffx.18294.1.S1_at--120--8511Chr10:9236208..9236232 (25 bp)
TGGCACCGAGGCACTTAGAAAGCTT
LOC_Os10g18800
OsAffx.18294.1.S1_at--411--8251Chr10:9236217..9236241 (25 bp)
GGCACTTAGAAAGCTTGATATTCAT
LOC_Os10g18800
OsAffx.18294.1.S1_at--1110--6511Chr10:9236233..9236257 (25 bp)
GATATTCATGCATTTTACACTCCAA
LOC_Os10g18800
OsAffx.18294.1.S1_at--260--131Chr10:9236236..9236260 (25 bp)
ATTCATGCATTTTACACTCCAAAAA
LOC_Os10g18800
OsAffx.18294.1.S1_at--541--3851NONE
CTGCACAAACAGTTCATGATACATT
NONE
OsAffx.18294.1.S1_at--635--2491Chr10:9237497..9237517 (21 bp)
AACAGTTCATGATACATTGATCACT
LOC_Os10g18800
Target Sequence 
GCGAGTGGGCCATTGTTGGTGGCACTGGGGAGTTTAATATGGCATATGGCACTATTGTGCACACTATGATCAAGCATAAT
GTTGGCACCGAGGCACTTAGAAAGCTTGATATTCATGCATTTTACACTCCAAAAACTGCACAAACAGTTCATGATACATT
GATCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis