Browse Element(s) Details


Os.46700.1.S1_at

Description gb:NM_195796.1
DB_XREF= gi:37532951
TID=Os.46700.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46700 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance response protein (OJ1325D05.19), mRNA.
PROD=putative disease resistance response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1882011/11Dirigent-like protein, expressed
LOC_Os08g056501/11Diacylglycerol kinase catalytic domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18790OsAffx.25936.2.S1_x_at11/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.1.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.7.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.5.S1_x_at2/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18800OsAffx.18294.1.S1_at10/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.23696.1.S1_x_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.988.1.S1_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18810NANA10+9243686..9244075hypothetical protein
LOC_Os10g18820Os.46700.1.S1_at11/1110+9251735..9252982Dirigent-like protein, expressed
LOC_Os10g18830OsAffx.266.1.S1_at11/1110+9253893..9257475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.265.1.S1_at11/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.8264.1.S1_at3/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18850OsAffx.20513.1.S1_at11/1110+9275834..9276787hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007205biological_processprotein kinase C activation
GO:0009807biological_processlignan biosynthesis
GO:0030148biological_processsphingolipid biosynthesis
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46700.1.S1_at--677--10651Chr10:9252841..9252865 (25 bp)
TTCCAACATTCCTGAGCATGGCTGC
LOC_Os10g18820
Os.46700.1.S1_at--179--4791Chr10:9252821..9252845 (25 bp)
GCTGCCAGCACCTACTATGATATAT
LOC_Os10g18820
Os.46700.1.S1_at--573--8551Chr10:9252790..9252814 (25 bp)
TGGAGTGTGGTTGCCCTGACCAAAA
LOC_Os10g18820
Os.46700.1.S1_at--523--1011Chr10:9252763..9252787 (25 bp)
AGGTTACCATGCACTTGTACCTGCA
LOC_Os10g18820
Os.46700.1.S1_at--1082--6971Chr10:9252747..9252771 (25 bp)
GTACCTGCACCAGTTTGTTGCTGGA
LOC_Os10g18820
Os.46700.1.S1_at--699--9991Chr10:9252688..9252712 (25 bp)
TAGCCTCGAGCTATCCTAATGGATT
LOC_Os10g18820
Os.46700.1.S1_at--688--791Chr10:9252670..9252694 (25 bp)
ATGGATTCGGTACAACACTCGTTGA
LOC_Os10g18820
Os.46700.1.S1_at--561--7831Chr10:9252547..9252571 (25 bp)
GGTACACTTCCCACAACATTGTGTT
LOC_Os10g18820
Os.46700.1.S1_at--648--991Chr10:9252355..9252379 (25 bp)
AGGTTTAAGGGATCCACACTTCAGG
LOC_Os10g18820
Os.46700.1.S1_at--421--8071Chr10:9252277..9252301 (25 bp)
GGAGAATTTTCAATGGCCCATGGCA
LOC_Os10g18820
Os.46700.1.S1_at--1149--9812Chr08:3013846..3013959 (24 bp)
TAAAGTTCACAACGGACCCAAGCTC
LOC_Os08g05650
Target Sequence 
TTCCAACATTCCTGAGCATGGCTGCCAGCACCTACTATGATATATGTCCTGTGGAGTGTGGTTGCCCTGACCAAAATGAG
GTTACCATGCACTTGTACCTGCACCAGTTTGTTGCTGGAGCAAATCACCCAAACCGCAATGAAGAATTTGTGATAGCCTC
GAGCTATCCTAATGGATTCGGTACAACACTCGTTGATGACTGGTATTTAACAGCTACNACCAATCCCAATGATAATATCG
TTGCACGTGTACAAGGCATGCATGTCCAGGCTGGCCAAAGCAATGCTAACATGTGGTACACTTCCCACAACATTGTGTTC
CAGGATGACAGGTTTAAGGGATCCACACTTCAGGTGATGGGGATTATTGCTGCAAGCAGTGGTGAGTGGTCTGTTATTGG
TGGAACTGGAGAATTTTCAATGGCCCATGGCAGTATAAAGTTCACAACGGACCCAAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis