Browse Element(s) Details


OsAffx.20513.1.S1_at

Description tigr:9638.m01577
TID=OsAffx.20513.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1885011/11hypothetical protein
LOC_Os03g303342/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18820Os.46700.1.S1_at11/1110+9251735..9252982Dirigent-like protein, expressed
LOC_Os10g18830OsAffx.266.1.S1_at11/1110+9253893..9257475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.265.1.S1_at11/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.8264.1.S1_at3/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18850OsAffx.20513.1.S1_at11/1110+9275834..9276787hypothetical protein
LOC_Os10g18860OsAffx.8275.1.S1_at11/1110+9279141..9283366retrotransposon protein, putative, unclassified
LOC_Os10g18870Os.18378.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870Os.18378.1.S1_s_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870OsAffx.30449.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18880OsAffx.30450.1.S1_at11/1110+9290488..9292203hypothetical protein
LOC_Os10g18890Os.46466.1.S1_at11/1110+9293329..9297181HNH endonuclease family protein, expressed
LOC_Os10g18899NANA10+9298318..9298518NA
LOC_Os10g18910OsAffx.10645.1.S1_at3/1110+9300481..9300798hypothetical protein
LOC_Os10g18920OsAffx.30451.1.S1_s_at8/1110+9301534..9302038hypothetical protein
LOC_Os10g18920OsAffx.30451.3.S1_x_at2/1110+9301534..9302038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20513.1.S1_at--67--4031Chr10:9276650..9276674 (25 bp)
CGCTTTTGCACCTCCAGGATGGACG
LOC_Os10g18850
OsAffx.20513.1.S1_at--822--10271Chr10:9276646..9276670 (25 bp)
TTTGCACCTCCAGGATGGACGCCGG
LOC_Os10g18850
OsAffx.20513.1.S1_at--31--5091Chr10:9276643..9276667 (25 bp)
GCACCTCCAGGATGGACGCCGGCAG
LOC_Os10g18850
OsAffx.20513.1.S1_at--886--8251Chr10:9276623..9276647 (25 bp)
GGCAGCCTGCGTCGACCTGCAACAG
LOC_Os10g18850
OsAffx.20513.1.S1_at--7--7215Chr03:17259484..17259647 (25 bp)
GTCGACCTGCAACAGTACCCTCTGA
LOC_Os03g30334
OsAffx.20513.1.S1_at--802--5836Chr06:24677282..24677699 (25 bp)
GACCTGCAACAGTACCCTCTGATAC
NONE
OsAffx.20513.1.S1_at--293--2473Chr03:24257429..24257449 (21 bp)
AACAGTACCCTCTGATACCCCATAA
NONE
OsAffx.20513.1.S1_at--777--1153Chr03:24257429..24257452 (24 bp)
AGTACCCTCTGATACCCCATAAGTA
NONE
OsAffx.20513.1.S1_at--60--3391Chr10:9276445..9276469 (25 bp)
CTCTGATACCCCATAAGTACCAGGC
LOC_Os10g18850
OsAffx.20513.1.S1_at--770--6471Chr10:9276441..9276465 (25 bp)
GATACCCCATAAGTACCAGGCTTTA
LOC_Os10g18850
OsAffx.20513.1.S1_at--31--9971Chr10:9276439..9276463 (25 bp)
TACCCCATAAGTACCAGGCTTTATA
LOC_Os10g18850
Target Sequence 
CGCTTTTGCACCTCCAGGATGGACGCCGGCAGCCTGCGTCGACCTGCAACAGTACCCTCTGATACCCCATAAGTACCAGG
CTTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis