Browse Element(s) Details


Os.46466.1.S1_at

Description gb:AK073900.1
DB_XREF= gi:32983923
TID=Os.46466.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative HNH endonuclease (OJ1325D05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073J04, full insert sequence.
FL= gb:AK064034.1 gb:AK073900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1889011/11HNH endonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18850OsAffx.20513.1.S1_at11/1110+9275834..9276787hypothetical protein
LOC_Os10g18860OsAffx.8275.1.S1_at11/1110+9279141..9283366retrotransposon protein, putative, unclassified
LOC_Os10g18870Os.18378.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870Os.18378.1.S1_s_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870OsAffx.30449.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18880OsAffx.30450.1.S1_at11/1110+9290488..9292203hypothetical protein
LOC_Os10g18890Os.46466.1.S1_at11/1110+9293329..9297181HNH endonuclease family protein, expressed
LOC_Os10g18899NANA10+9298318..9298518NA
LOC_Os10g18910OsAffx.10645.1.S1_at3/1110+9300481..9300798hypothetical protein
LOC_Os10g18920OsAffx.30451.1.S1_s_at8/1110+9301534..9302038hypothetical protein
LOC_Os10g18920OsAffx.30451.3.S1_x_at2/1110+9301534..9302038hypothetical protein
LOC_Os10g18930OsAffx.25917.1.S1_at1/1110+9306154..9307068hypothetical protein
LOC_Os10g18930OsAffx.22629.1.S1_at1/1110+9306154..9307068hypothetical protein
LOC_Os10g18940OsAffx.8356.1.S1_x_at1/1110+9312393..9316371Transposable element protein, putative, Retrotrans_gag
LOC_Os10g18940OsAffx.14826.1.S1_at1/1110+9312393..9316371Transposable element protein, putative, Retrotrans_gag
LOC_Os10g18950Os.56292.1.S1_at1/1110+9317591..9318748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18950Os.56292.1.S1_x_at1/1110+9317591..9318748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18960Os.47004.1.S1_at11/1110+9321469..9323842retrotransposon protein, putative, unclassified
LOC_Os10g18960Os.10731.1.A1_a_at11/1110+9321469..9323842retrotransposon protein, putative, unclassified
LOC_Os10g18960Os.48015.1.A1_x_at2/1110+9321469..9323842retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46466.1.S1_at--870--1471Chr10:9296614..9296638 (25 bp)
AGAATCAGATGGCTGCTTGCGAGTT
LOC_Os10g18890
Os.46466.1.S1_at--1038--9171Chr10:9296651..9296675 (25 bp)
TGCCTCCTAGCATAAGTCATATCGT
LOC_Os10g18890
Os.46466.1.S1_at--814--1251Chr10:9296692..9296716 (25 bp)
AGATTCATTATGGTCCGCACGGGCA
LOC_Os10g18890
Os.46466.1.S1_at--511--6031Chr10:9296725..9296749 (25 bp)
GAGATCACTACCCTGATTTCATGCT
LOC_Os10g18890
Os.46466.1.S1_at--310--411Chr10:9296834..9296858 (25 bp)
ATCAGTTCCGTGTTGATTTGTGCAA
LOC_Os10g18890
Os.46466.1.S1_at--470--211Chr10:9296849..9296873 (25 bp)
ATTTGTGCAATTGGACTGGCTAGTT
LOC_Os10g18890
Os.46466.1.S1_at--172--9671Chr10:9296883..9296907 (25 bp)
TCACCCTGGGTAGTTTCAACTTACA
LOC_Os10g18890
Os.46466.1.S1_at--637--7891Chr10:9296921..9296945 (25 bp)
GGTTCATTAGCTGGGTTGGTTTATC
LOC_Os10g18890
Os.46466.1.S1_at--975--3171Chr10:9297002..9297026 (25 bp)
AATTGGTAGCCACTTGCCAGTTTGT
LOC_Os10g18890
Os.46466.1.S1_at--396--1171Chr10:9297093..9297117 (25 bp)
AGTAACTGTAGCCTGCACGCTGCAG
LOC_Os10g18890
Os.46466.1.S1_at--846--5091Chr10:9297107..9297131 (25 bp)
GCACGCTGCAGTTAATTGCTCTGTG
LOC_Os10g18890
Target Sequence 
AGAATCAGATGGCTGCTTGCGAGTTNCCANATAATGATGCCTCCTAGCATAAGTCATATCGTTCTGCACAACNACACCAG
ATTCATTATGGTCCGCACGGGCAGCAAGCCTGAGATCACTACCCTGATTTCATGCTCTATTNTGATAATGAACATATTTG
ACTTTAGGATCTCTNACATTGGTTGTAACACCGTTACACCAACATGGTGTGCTAGGTNAGATCAGTTCCGTGTTGATTTG
TGCAATTGGACTGGCTAGTTNGGTTCCTTTCACCCTGGGTAGTTTCAACTTACATGGTACTATCTATGGTTCATTAGCTG
GGTTGGTTTATCTATAGTTGGGTCTCTAGAGAATTTTAGGACCTAATAGAAAGAGAGATCGATTTTGTAATTGGTAGCCA
CTTGCCAGTTTGTGAAACAAAACTGAAGTGGTATGTGAGCAGTAGGAACTGNACNAGAAATGCATTGCCGAAATGTCGNA
GTAACTGTAGCCTGCACGCTGCAGTTAATTGCTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis