Browse Element(s) Details


Os.18378.1.S1_s_at

Description gb:NM_195802.1
DB_XREF= gi:37532963
TID=Os.18378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18378 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance response protein (OJ1325D05.13), mRNA.
PROD=putative disease resistance response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1887011/11dirigent, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18840OsAffx.265.1.S1_at11/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.8264.1.S1_at3/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18850OsAffx.20513.1.S1_at11/1110+9275834..9276787hypothetical protein
LOC_Os10g18860OsAffx.8275.1.S1_at11/1110+9279141..9283366retrotransposon protein, putative, unclassified
LOC_Os10g18870Os.18378.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870Os.18378.1.S1_s_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870OsAffx.30449.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18880OsAffx.30450.1.S1_at11/1110+9290488..9292203hypothetical protein
LOC_Os10g18890Os.46466.1.S1_at11/1110+9293329..9297181HNH endonuclease family protein, expressed
LOC_Os10g18899NANA10+9298318..9298518NA
LOC_Os10g18910OsAffx.10645.1.S1_at3/1110+9300481..9300798hypothetical protein
LOC_Os10g18920OsAffx.30451.1.S1_s_at8/1110+9301534..9302038hypothetical protein
LOC_Os10g18920OsAffx.30451.3.S1_x_at2/1110+9301534..9302038hypothetical protein
LOC_Os10g18930OsAffx.25917.1.S1_at1/1110+9306154..9307068hypothetical protein
LOC_Os10g18930OsAffx.22629.1.S1_at1/1110+9306154..9307068hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18378.1.S1_s_at--632--8691Chr10:9285423..9285447 (25 bp)
TGTGCTCCGCGATCAGTGTGAGATT
LOC_Os10g18870
Os.18378.1.S1_s_at--389--9951Chr10:9285447..9285471 (25 bp)
TACCATGAGATTGTACTTGCACCAA
LOC_Os10g18870
Os.18378.1.S1_s_at--1126--2031Chr10:9285461..9285485 (25 bp)
ACTTGCACCAAGTTGTTACAGGGCC
LOC_Os10g18870
Os.18378.1.S1_s_at--421--8791Chr10:9285474..9285498 (25 bp)
TGTTACAGGGCCAAACCACAACCAA
LOC_Os10g18870
Os.18378.1.S1_s_at--337--1431Chr10:9285498..9285522 (25 bp)
AGAAACAATGGTGCCCTCATCACAT
LOC_Os10g18870
Os.18378.1.S1_s_at--1120--2091Chr10:9285519..9285543 (25 bp)
ACATCCCGCTTCGTTTGGTATGATT
LOC_Os10g18870
Os.18378.1.S1_s_at--398--6591Chr10:9285540..9285564 (25 bp)
GATTGTTATCAACGATTGGCCTATC
LOC_Os10g18870
Os.18378.1.S1_s_at--705--6611Chr10:9285553..9285577 (25 bp)
GATTGGCCTATCTATGATGGACCTG
LOC_Os10g18870
Os.18378.1.S1_s_at--887--6231Chr10:9285568..9285592 (25 bp)
GATGGACCTGACTTCAACACAAGTA
LOC_Os10g18870
Os.18378.1.S1_s_at--709--5271Chr10:9285614..9285638 (25 bp)
GAATGCATGTCCAGGTTGATCAAGT
LOC_Os10g18870
Os.18378.1.S1_s_at--689--9431Chr10:9286003..9286027 (25 bp)
TCGGTGGGACTGGACAACTTGCTAT
LOC_Os10g18870
Target Sequence 
TGTGCTCCGCGATCAGTGTGAGATTACCATGAGATTGTACTTGCACCAAGTTGTTACAGGGCCAAACCACAACCAAGAAA
CAATGGTGCCCTCATCACATCCCGCTTCGTTTGGTATGATTGTTATCAACGATTGGCCTATCTATGATGGACCTGACTTC
AACACAAGTACTATTGTTGCACATGCAAGAGGAATGCATGTCCAGGTTGATCAAGTTAACAACACCTGGTACACATCTAT
GAACATAGAGTTTGTGGATGCCAGATTCTTGTGGCGCATAATAATTTTGAAATGGTACAGGTTTAATGGATCAAAGCTTC
AGGTGATGGGGACTACTCCAGAAACTGGTGAGTGGGCCATTGTCGGTGGGACTGGACAACTTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18378.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis