Browse Element(s) Details


OsAffx.30451.1.S1_s_at

Description tigr:9638.m01584
TID=OsAffx.30451.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g082308/11Cytochrome P450 family protein
LOC_Os02g259908/11hypothetical protein
LOC_Os10g189208/11hypothetical protein
LOC_Os09g069798/11
LOC_Os07g295504/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08180Os.45173.1.S1_x_at6/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08180OsAffx.8473.1.S1_x_at1/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08180OsAffx.20877.1.S1_at1/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08190OsAffx.30061.1.S1_at11/1110+4198801..4200525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08200OsAffx.8469.1.S1_x_at11/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08200Os.38751.1.A1_at4/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08200OsAffx.8847.1.S1_x_at1/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08210OsAffx.8468.1.S1_at11/1110+4203971..4205293transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08220OsAffx.18170.1.S1_at11/1110+4208873..4209412expressed protein
LOC_Os10g08230OsAffx.30451.2.S1_at11/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.30451.1.S1_s_at8/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.30451.3.S1_x_at7/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.9886.1.S1_at1/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08240Os.56292.1.S1_x_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240Os.54523.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240OsAffx.24838.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240OsAffx.593.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08250NANA10+4222822..4226151transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.47463.1.S1_x_at6/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.14491.2.S1_x_at5/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30451.1.S1_s_at--1116--54552Chr12:12181817..12181838 (22 bp)
GAACGTGTGTGGTCAGATCTTCCTC
NONE
OsAffx.30451.1.S1_s_at--669--25752Chr12:12181818..12181838 (21 bp)
AACGTGTGTGGTCAGATCTTCCTCC
NONE
OsAffx.30451.1.S1_s_at--612--19148Chr12:12181819..12182291 (25 bp)
ACGTGTGTGGTCAGATCTTCCTCCG
NONE
OsAffx.30451.1.S1_s_at--861--39949Chr12:12181820..12182292 (25 bp)
CGTGTGTGGTCAGATCTTCCTCCGG
NONE
OsAffx.30451.1.S1_s_at--928--74744Chr11:17323142..17323166 (25 bp)
GTGTGTGGTCAGATCTTCCTCCGGT
NONE
OsAffx.30451.1.S1_s_at--759--86544Chr11:17323143..17323167 (25 bp)
TGTGTGGTCAGATCTTCCTCCGGTT
NONE
OsAffx.30451.1.S1_s_at--265--73149Chr11:17323144..17323168 (25 bp)
GTGTGGTCAGATCTTCCTCCGGTTC
NONE
OsAffx.30451.1.S1_s_at--185--86747Chr11:17323145..17323169 (25 bp)
TGTGGTCAGATCTTCCTCCGGTTCA
NONE
Target Sequence 
GAACGTGTGTGGTCAGATCTTCCTCCGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30451.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis