Browse Element(s) Details


OsAffx.8847.1.S1_x_at

Description gb:NM_194097.1
DB_XREF= gi:34915231
TID=OsAffx.8847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0045F02.22 (P0045F02.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g123302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g173701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g082001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g081401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g291901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g224501/11hypothetical protein
LOC_Os04g036801/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12290NANA4+6765758..6767296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12300NANA4+6770522..6771555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12310Os.45173.1.S1_x_at5/114+6771837..6778492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12320Os.45173.1.S1_x_at2/114+6781135..6787327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12330OsAffx.8847.1.S1_x_at2/114+6788301..6788726retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12330OsAffx.8338.1.S1_x_at1/114+6788301..6788726retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12340OsAffx.828.1.S1_x_at1/114+6789385..6789849retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12350OsAffx.22699.1.S1_x_at2/114+6792842..6796567retrotransposon protein, putative, unclassified
LOC_Os04g12360OsAffx.13786.1.S1_x_at11/114+6797633..6798387hypothetical protein
LOC_Os04g12360OsAffx.18275.1.S1_x_at1/114+6797633..6798387hypothetical protein
LOC_Os04g12360OsAffx.18275.2.S1_at1/114+6797633..6798387hypothetical protein
LOC_Os04g12360OsAffx.18275.2.S1_x_at1/114+6797633..6798387hypothetical protein
LOC_Os04g12370Os.10626.4.A1_s_at11/114+6802248..6802679hypothetical protein
LOC_Os04g12370Os.40531.1.A1_x_at3/114+6802248..6802679hypothetical protein
LOC_Os04g12380NANA4+6809598..6811322retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8847.1.S1_x_at--663--8375Chr12:9009098..9009248 (25 bp)
GGCGACGTTCGGGTCGACGATGACG
NONE
OsAffx.8847.1.S1_x_at--860--73140Chr11:4268271..4268291 (21 bp)
GTGCTCCGGCGATCTTCGGCGGAAA
LOC_Os11g08140
OsAffx.8847.1.S1_x_at--1041--9278Chr10:2309244..2309264 (21 bp)
TCCGGCGATCTTCGGCGGAAATAGA
NONE
OsAffx.8847.1.S1_x_at--954--3611Chr07:11047553..11047577 (25 bp)
CTTCGGCGGAAATAGAAGACGGGAT
NONE
OsAffx.8847.1.S1_x_at--992--62119Chr12:14395087..14395110 (24 bp)
GATGGCGGCCTTCCCGAGCGACGAT
NONE
OsAffx.8847.1.S1_x_at--734--1936Chr10:2309352..2309749 (25 bp)
ACGGCTGGACTTGCGGCGACGACGG
NONE
OsAffx.8847.1.S1_x_at--488--3731Chr07:11047688..11047712 (25 bp)
CTAACGCGGAGGTGGCGCTACAAGC
NONE
OsAffx.8847.1.S1_x_at--616--9851Chr07:11047706..11047980 (25 bp)
TACAAGCGGCGGAAAGACACACGCG
NONE
OsAffx.8847.1.S1_x_at--1072--3931Chr07:11047966..11047986 (21 bp)
CGGCGGAAAGACACACGCGAATTTG
NONE
OsAffx.8847.1.S1_x_at--519--2331Chr07:11047968..11047992 (25 bp)
AAAGACACACGCGAATTTGGAAGGA
NONE
OsAffx.8847.1.S1_x_at--141--5611Chr07:11047971..11047995 (25 bp)
GACACACGCGAATTTGGAAGGAGGC
NONE
Target Sequence 
GGCGACGTTCGGGTCGACGATGACGGCGGTGCTCCGGCGATCTTCGGCGGAAATAGAAGACGGGATGAGGACGGCGACGA
CTTGGCGATCCCGATGGCGGCCTTCCCGAGCGACGATGACGACCGGAGCGGCGTCGGCGCACGGCTGGACTTGCGGCGAC
GACGGCGGCGCACGGGCTAACGCGGAGGTGGCGCTACAAGCGGCGGAAAGACACACGCGAATTTGGAAGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8847.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis