Browse Element(s) Details


OsAffx.18170.1.S1_at

Description tigr:9638.m00690
TID=OsAffx.18170.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0822011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08180Os.45173.1.S1_x_at6/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08180OsAffx.8473.1.S1_x_at1/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08180OsAffx.20877.1.S1_at1/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08190OsAffx.30061.1.S1_at11/1110+4198801..4200525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08200OsAffx.8469.1.S1_x_at11/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08200Os.38751.1.A1_at4/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08200OsAffx.8847.1.S1_x_at1/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08210OsAffx.8468.1.S1_at11/1110+4203971..4205293transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08220OsAffx.18170.1.S1_at11/1110+4208873..4209412expressed protein
LOC_Os10g08230OsAffx.30451.2.S1_at11/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.30451.1.S1_s_at8/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.30451.3.S1_x_at7/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.9886.1.S1_at1/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08240Os.56292.1.S1_x_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240Os.54523.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240OsAffx.24838.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240OsAffx.593.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08250NANA10+4222822..4226151transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.47463.1.S1_x_at6/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.14491.2.S1_x_at5/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008615biological_processpyridoxine biosynthesis
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18170.1.S1_at--506--3191Chr10:4208943..4208967 (25 bp)
CAATCACTTCGCCACAAGCAAGATC
LOC_Os10g08220
OsAffx.18170.1.S1_at--880--10631Chr10:4208950..4208974 (25 bp)
TTCGCCACAAGCAAGATCCACAGGA
LOC_Os10g08220
OsAffx.18170.1.S1_at--563--1291Chr10:4208963..4208987 (25 bp)
AGATCCACAGGATGGGCATCCTCCA
LOC_Os10g08220
OsAffx.18170.1.S1_at--367--3311Chr10:4208968..4208992 (25 bp)
CACAGGATGGGCATCCTCCAATGGC
LOC_Os10g08220
OsAffx.18170.1.S1_at--240--6171Chr10:4209030..4209054 (25 bp)
GAGGAGGCTGGCATGGCACCTGCGC
LOC_Os10g08220
OsAffx.18170.1.S1_at--58--7791Chr10:4209123..4209147 (25 bp)
GGTGCTCATCCACGACATCAAGTGC
LOC_Os10g08220
OsAffx.18170.1.S1_at--129--9611Chr10:4209128..4209152 (25 bp)
TCATCCACGACATCAAGTGCGTCGT
LOC_Os10g08220
OsAffx.18170.1.S1_at--401--5931Chr10:4209184..4209208 (25 bp)
GAGCACTTTGTGGAGGCCCGGATCT
LOC_Os10g08220
OsAffx.18170.1.S1_at--1008--871Chr10:4209212..4209236 (25 bp)
AGGCCATCGGCGAGGCACAACTTCC
LOC_Os10g08220
OsAffx.18170.1.S1_at--414--3531Chr10:4209216..4209240 (25 bp)
CATCGGCGAGGCACAACTTCCGCGT
LOC_Os10g08220
OsAffx.18170.1.S1_at--770--891Chr10:4209324..4209348 (25 bp)
AGGCGCCGCTGACATGGCCAACGCA
LOC_Os10g08220
Target Sequence 
CAATCACTTCGCCACAAGCAAGATCCACAGGATGGGCATCCTCCAATGGCGGCGAGCGCCGTCACACCCGAGCAGGCACG
CCTCGCCGAGGAGGCTGGCATGGCACCTGCGCGGTCATGGCGCTGGAGCGCATCCTCGCCGACATCCGCGCGCAGGCAGC
GTCGCCCACATGTCCGACCCGGTGCTCATCCACGACATCAAGTGCGTCGTCACCATCCCAGTCATGGCCAAGGCCCGCAT
TGAGCACTTTGTGGAGGCCCGGATCTTGGAGGCCATCGGCGAGGCACAACTTCCGCGTCCTCTTCGTCTGCGGCTGCCGC
GACCTTGGCGAGGCGCTCCGCCGCATCCGCGAAGGCGCCGCCATAATCCGCACCAAGGGCGAGGCGCCGCTGACATGGCC
AACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis