Browse Element(s) Details


OsAffx.8468.1.S1_at

Description gb:NM_194999.1
DB_XREF= gi:37531357
TID=OsAffx.8468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBa0089D15.18), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0821011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g243505/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08180Os.45173.1.S1_x_at6/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08180OsAffx.8473.1.S1_x_at1/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08180OsAffx.20877.1.S1_at1/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08190OsAffx.30061.1.S1_at11/1110+4198801..4200525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08200OsAffx.8469.1.S1_x_at11/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08200Os.38751.1.A1_at4/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08200OsAffx.8847.1.S1_x_at1/1110+4201488..4203099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08210OsAffx.8468.1.S1_at11/1110+4203971..4205293transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08220OsAffx.18170.1.S1_at11/1110+4208873..4209412expressed protein
LOC_Os10g08230OsAffx.30451.2.S1_at11/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.30451.1.S1_s_at8/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.30451.3.S1_x_at7/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08230OsAffx.9886.1.S1_at1/1110+4211473..4213370Cytochrome P450 family protein
LOC_Os10g08240Os.56292.1.S1_x_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240Os.54523.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240OsAffx.24838.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08240OsAffx.593.1.S1_at1/1110+4215992..4218772hypothetical protein
LOC_Os10g08250NANA10+4222822..4226151transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.47463.1.S1_x_at6/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.14491.2.S1_x_at5/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8468.1.S1_at--290--10272Chr10:4204697..4204721 (25 bp)
TTTGCAGTGTTACGACAGTCAGCTT
LOC_Os10g08210
OsAffx.8468.1.S1_at--300--8631Chr10:4204722..4204746 (25 bp)
TGGTGGCTCCGTACGTGGACATGCA
LOC_Os10g08210
OsAffx.8468.1.S1_at--390--5672Chr10:4204739..4204763 (25 bp)
GACATGCACTTGGATGTACTCCTTA
LOC_Os10g08210
OsAffx.8468.1.S1_at--431--2552Chr10:4204846..4204870 (25 bp)
AACTGCAGACATCGATGGTGCCCTT
LOC_Os10g08210
OsAffx.8468.1.S1_at--537--2193Chr10:4204896..4204920 (25 bp)
ACACAATCCACATGTACCAGGGCTA
LOC_Os10g08210
OsAffx.8468.1.S1_at--392--6751Chr10:4204933..4204957 (25 bp)
GTATACCTTTTACACCAAGGCCCAG
LOC_Os10g08210
OsAffx.8468.1.S1_at--70--2431Chr10:4204977..4205001 (25 bp)
AAAACAGTGGCGTGCGCATCGACAC
LOC_Os10g08210
OsAffx.8468.1.S1_at--43--6531Chr10:4205063..4205087 (25 bp)
GATTATGGAGCCCTCAAAGTCCCTC
LOC_Os10g08210
OsAffx.8468.1.S1_at--577--2852Chr10:4205079..4205103 (25 bp)
AAGTCCCTCTATTCCAATGCAAATG
LOC_Os10g08210
OsAffx.8468.1.S1_at--109--1312Chr10:4205179..4205203 (25 bp)
AGATGAACCATTCGTGCTCGCAAAG
LOC_Os10g08210
OsAffx.8468.1.S1_at--964--231Chr10:4205223..4205247 (25 bp)
ATATCAAGGACCCATCACTCGTGAG
LOC_Os10g08210
Target Sequence 
TTTGCAGTGTTACGACAGTCAGCTTTGGTGGCTCCGTACGTGGACATGCACTTGGATGTACTCCTTAGAGACAATCCCAG
GAAAGGAGCAGCATGGCTCGCGAAGATGCATAAACATCAATTTGGGAAATGGTTGATGGAGTACCTGACAACTGCAGACA
TCGATGGTGCCCTTTTTTCTTTATCTCGGGGGCCATCCAACACAATCCACATGTACCAGGGCTATGATATGAACGGGTAT
ACCTTTTACACCAAGGCCCAGGACAACAAGAGTACAAATCAAAACAGTGGCGTGCGCATCGACACCTACGATGACGGTGG
CAACAAGCAGACTTATTACGGTTTCATACAGTCAATCTGGGAGTTAGATTATGGAGCCCTCAAAGTCCCTCTATTCCAAT
GCAAATGGGTCAAAATTCCAAGGGGTTTGAAGATTGACAAGCATGGAACGATCATCGTTGACCTGAATGATGTTGGCTAC
GAAGATGAACCATTCGTGCTCGCAAAGTCCGTTAAACAAATATTCTATATCAAGGACCCATCACTCGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis